CX293852

Overview
NameCX293852
Unique NameCX293852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:56..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.062e-33
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  P +SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +RADLIAYLK+ST+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_APTPA (Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.387e-33
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+G+FGR++G    +SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGIFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC2_XENLA (Cytochrome c, testis-specific OS=Xenopus laevis GN=cyct PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 1.812e-33
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+K+F  KC+QCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W+E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLKQST+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEDTLMVYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC1A_XENLA (Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-A PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 1.812e-33
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+A+ G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  P +SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAEKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_MELGA (Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.366e-33
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CHICK (Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.366e-33
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_THELA (Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.091e-33
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   54 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            PG+A  G  +FKT+CAQCH+VE+G  +K GPNL+GLFGR++G+   YSY+ ANK   + W E TL++YL NPKK+IPGTKM F GLKK +DR DLI YLK++T
Sbjct:    8 PGDASKGANLFKTRCAQCHSVEQGGANKIGPNLHGLFGRKTGSVEGYSYTDANKQAGITWNEDTLFEYLENPKKFIPGTKMAFGGLKKNKDRNDLITYLKEAT 110          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CYPCA (Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.091e-33
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+K+F  KCAQCHTVE G  HK GPNL GLFGR++G  P +SY+ ANK+  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWBEZTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CROVV (Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.091e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC  CHTVE+G  HK GPNL+GLFGR++G    YSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CROAT (Cytochrome c OS=Crotalus atrox PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.091e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC  CHTVE+G  HK GPNL+GLFGR++G    YSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
The following BLAST results are available for this feature:
BLAST of CX293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC1_XENTR1.062e-3363.11Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]
CYC_APTPA1.387e-3361.17Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=... [more]
CYC2_XENLA1.812e-3362.14Cytochrome c, testis-specific OS=Xenopus laevis GN... [more]
CYC1A_XENLA1.812e-3363.11Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-... [more]
CYC_MELGA2.366e-3361.17Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV... [more]
CYC_CHICK2.366e-3361.17Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2[more]
CYC_THELA3.091e-3360.19Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1[more]
CYC_CYPCA3.091e-3361.17Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc... [more]
CYC_CROVV3.091e-3362.14Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2[more]
CYC_CROAT3.091e-3362.14Cytochrome c OS=Crotalus atrox PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05001F05SK FlavSen1 Citrus clementina cDNA clone C05001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293852 ID=CX293852; Name=CX293852; organism=Citrus clementina; type=EST; length=422bp
CTCTTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCA
CCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGC
TCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATT
TGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGTGTACTCATAC
TCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTA
TGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTAT
TCCCTGGATTGAAGAAGCCTCAGGATCGCGCTGACCTTATTGCATATTTG
AAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCAT
TTTGCAGTTGTTGAAGATTGTT
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