CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SILPO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter pomeroyi GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA-IGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD++A + AC+A D+ +  +I A+E+ GG  +VTADHGN E M+     G            T+HTL PVP+A +GGP           L +G L+++A T + L G   P +
Sbjct:  394 NPDMVGHTGDLKAAIKACEAVDQGLSRVIAALEQAGGAMIVTADHGNCEMMIDPETGGPH----------TAHTLNPVPVALVGGPA-------GVTLRDGRLSDLAPTVLALMGLPKPPE 497          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  I++A+EKVGG  L+TADHGNAE M   +            Q  T+HT + VP+   G          A++  GG L+++A T + L G E P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDSCIGRIVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELVPLIYVGRD--------AEIEKGGRLSDLAPTMLTLMGQEVPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.729e-16
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  +++A+EKVGG  L+TADHGNAE M   +            Q  T+HT + +P+   G          A++ NGG L+++A T + L G + P +
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELIPLIYVGRD--------AEIENGGRLSDLAPTMLTLMGQDVPEE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.176e-16
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG + A + AC+A D+ + ++++A+EK GG  +V ADHGN E  +     G            T+HT  PVP+ + G   P+  K R    NG LA+VA T ++L G + P +
Sbjct:  394 NPDMVGHTGSLPAAIRACEAVDKGLGMMLEALEKAGGAAVVIADHGNCETTIDPETGGPH----------TAHTTNPVPVIVFGG--PEGAKLR----NGRLADVAPTVLDLMGLDLPPE 497          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D +V  ++ A+E VGG  L+TADHGNAE M                Q  T+HT + VP I +G P         A   NG L++VA T ++L G E P +
Sbjct:  397 PNGDMVGHTGNFDAAVKACEAVDHSVGRVVSALEAVGGECLITADHGNAEQMSDATTG----------QAHTAHTNELVPFIYVGRP---------AKARNGRLSDVAPTILHLIGMEQPDE 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_AGRT5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 49/121 (40.50%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAI-GGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD++A + AC+A D  +  ++ A+EKVGG  LV ADHGN E MV     G            T+HT  PVP+ + GGP         A + +G LA+VA T + L     P +
Sbjct:  393 NPDMVGHTGDLQAAIKACEAVDRGLGAVVAALEKVGGAMLVIADHGNCETMVDPVTGGPH----------TAHTTNPVPVILFGGPE-------GAKVHDGILADVAPTLLQLMNVPLPPE 496          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGL-PDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGGPG   D ++ R+    G LA+VA T + L     P+D
Sbjct:  421 NPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGPGYGKDTIRLRS---GGRLADVAPTLLELLELTPPAD 529          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_VIBPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio parahaemolyticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  EA   A +A DE+V  +++AI++VGG  L+TADHGNAE M+     G          V T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  398 PNADMVGHTGVYEAAEKAIEALDESVGKVVEAIKEVGGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +A V AC+A D  +  ++DA+ KV G  L+TADHGNAE M                Q  T+HT + VP I +G  G  +N        +G L+++A T + L G E PS+
Sbjct:  400 PNGDMVGHTGSFDAAVKACEAVDTCIGRVVDALAKVDGECLITADHGNAEQMTDEQTG----------QAHTAHTSELVPLIYVGRNGSIEN--------DGRLSDLAPTMLTLMGEEVPSE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  L+TADHGNAE M  R+ S          Q  T+HT + VP    G          A +  GG L+++A T +NL G + P++
Sbjct:  399 PNGDMVGHTGNFDAAVKACEAVDTCIGRVVDALAKVGGECLITADHGNAEQM--RDPS--------TGQAHTAHTSELVPFIYVGRD--------ASIAEGGRLSDIAPTMLNLMGQDIPAE 502          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_SILPO1.625e-1639.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH3.621e-1640.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA4.729e-1638.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARDP6.176e-1638.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO1.376e-1541.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AGRT51.797e-1540.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD2.347e-1540.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBPA4.003e-1541.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESH4.003e-1540.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEAM4.003e-1540.982,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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