CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI   GG  ++TADHGNA+ ++   ++GEP          T+HT  PVP+ +   G+         L  GG L ++A T ++L G E P +
Sbjct:  401 NPDMVGHSGMVEPTIKAIEAVDECLGEVVDAIIAKGGHAIITADHGNADILI--TETGEP---------HTAHTTNPVPVIVTKEGV--------TLREGGILGDLAPTLLDLLGVEKPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_STRCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 2
Query:    2 LPNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLP------NGGLANVAXTFINLHGYE 355
            L N D+VGHTG++ ATV AC+A D AV  I+ A    G   +   DHGNAE M K+         DG+++    HT  PVP+ I        V  R D P         LA+VA T ++L G++
Sbjct:  392 LANIDVVGHTGNLAATVTACEATDAAVDQILQAARNSGRWVVAVGDHGNAERMTKQ-------APDGSVRPYGGHTTNPVPLVI--------VPNRTDTPAPTLPGTATLADVAPTILHLLGHK 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACHK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis subsp. konkukian GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  +++AI    G+ L+TADHGNA++  +    GEP         +T+HT  PVP  +      ++V+ R D   G L ++A T + L G E P +
Sbjct:  400 NCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADE--ELTSEGEP---------MTAHTTNPVPFIV----TKNDVELRED---GILGDIAPTMLTLLGVEQPKE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACCZ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ZK / E33L) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  +++AI    G+ L+TADHGNA++  +    GEP         +T+HT  PVP  +      ++V+ R D   G L ++A T + L G E P +
Sbjct:  400 NCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADE--ELTSEGEP---------MTAHTTNPVPFIV----TKNDVELRED---GILGDIAPTMLTLLGVEQPKE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  +++AI    G+ L+TADHGNA++  +    GEP         +T+HT  PVP  +      ++V+ R D   G L ++A T + L G E P +
Sbjct:  400 NCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADE--ELTSEGEP---------MTAHTTNPVPFIV----TKNDVELRED---GILGDIAPTMLTLLGVEQPKE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus anthracis GN=gpmI PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  +++AI    G+ L+TADHGNA++  +    GEP         +T+HT  PVP  +      ++V+ R D   G L ++A T + L G E P +
Sbjct:  400 NCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADE--ELTSEGEP---------MTAHTTNPVPFIV----TKNDVELRED---GILGDIAPTMLTLLGVEQPKE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADL---PNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG +EA V A +  D  +  ++  I K+GG  L+TADHGNAE M            D N +  T+HT  PVP  +        V   AD+    NG LA+VA T +++ G + P +
Sbjct:  396 NPDMVGHTGKLEAAVQAIETVDHCLGRLVATIGKMGGTTLITADHGNAEYMA-----------DQNGKSWTAHTTNPVPFILIEGERRKVVGHGADVVLRENGCLADVAPTILDILGIDKPQE 507          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEF5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 49/120 (40.83%), Postives = 62/120 (51.67%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G  EA V A +  D  V  I+DA+EKVGG  L+TADHGN E M   +            Q  T+HT +PVP    G      +K R     G LA+VA T + L G   P++
Sbjct:  398 NGDMVGHSGVFEAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDESTG----------QAHTAHTTEPVPFIYVGKRA---LKVR---EGGVLADVAPTMLKLLGLPKPAE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_MYCCT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=gpmI PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDA-IEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSDYE 373
            N DMVGHTG+ +AT +ACK  D+ +K I D  + K  GI ++TADHGNAE M+           D + QV   HT   VPI I       N+K + + P   +A VA T ++L   E P + E
Sbjct:  418 NCDMVGHTGNNKATEIACKTLDDQLKRIHDEFVLKHNGIMVITADHGNAEIMI-----------DKDDQVNKKHTTSLVPIII----TDKNIKLKQNDP--AIAKVAPTILDLMNIEIPKEME 523          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ANAVT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINL 343
            N DMVGHTG IE T+ A +  D  +  +++ + K GG  ++TADHGNAE M         L + GN    T+HT  PVP I + G     PG   NV+ R+D   G LA++A T +++
Sbjct:  396 NPDMVGHTGQIEPTIQAIETVDRCLGRLLEGVSKAGGTTIITADHGNAEYM---------LDEAGN--SWTAHTTNPVPLILVEGEKVKIPGYGTNVELRSD---GKLADIAPTILDI 499          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_BACA24.893e-1337.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STRCO6.391e-1337.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHK6.391e-1336.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCZ6.391e-1336.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCR6.391e-1336.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAN6.391e-1336.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP28.347e-1338.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEF58.347e-1340.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCCT8.347e-1339.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAVT8.347e-1339.832,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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