CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ANASP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena sp. (strain PCC 7120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINL 343
            N DMVGHTG IE T+ A +  D  +  +++ + K GG  ++TADHGNAE M         L + GN    T+HT  PVP I + G     PG   NV+ R+D   G LA++A T +++
Sbjct:  396 NPDMVGHTGQIEPTIKAIETVDRCLGRLLEGVSKAGGTTIITADHGNAEYM---------LDEAGN--SWTAHTTNPVPLILVEGEKVKIPGYGTNVELRSD---GKLADIAPTILDI 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_VESOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            NTDMVGH+G ++AT+ A +A D  + II  A+  +GG  L+TADHGNAE M+    +          +V T+HT  PVP+        D +K       G L+++A T + +   E P +
Sbjct:  397 NTDMVGHSGKLDATIKAVEAVDTCLGIIYKAMFAIGGEMLITADHGNAEQMINPQTN----------EVHTAHTNNPVPLIFVSNRKADIMK----PGKGALSDIAPTLLAMMDIEKPDE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSE14 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 49/120 (40.83%), Postives = 62/120 (51.67%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +EA + A +  D  V  I  A+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G   P  V+       G LA+VA T ++L G E P +
Sbjct:  397 NGDMVGHSGIMEAAIKAVECLDVCVGRITAALEKVGGEALITADHGNVEQMT----------DDSTGQAHTAHTSEPVPFVYVGK-RPLKVR-----EGGVLADVAPTMLHLLGMEKPQE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_MICAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Microcystis aeruginosa (strain NIES-843) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 48/124 (38.71%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAP 361
            N DMVGHTG ++A + A +  D  +  ++ ++ K+GG  L+TADHGNAE MV  ++SG P          T+HT  PVP I I G     PG   +V+ R D   G LA++A T + +     P
Sbjct:  396 NPDMVGHTGILDAAMKAVETVDLCLAKLLSSVNKLGGTVLITADHGNAETMV--DESGNP---------WTAHTTNPVPLILIEGEGRKIPGHGGDVQLRDD---GRLADIAPTILEILSIPVP 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 2
Query:    2 LPNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            L N DMVGH+G +EA V A +  D+ V  II AI++VGG  +V ADHGNAE MV+   + E        Q  T+HT  PV        +    + R +L  G L++VA T + + G E P +
Sbjct:  400 LANMDMVGHSGIMEAAVKAVEVVDDCVGKIITAIKEVGGEAMVMADHGNAEKMVEFCNNTER-------QCYTAHTSNPVRC------IYVTQEKRVELQKGRLSDVAPTILKIMGIEKPPE 508          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG ++AT+ A +A D  V  ++ ++ ++GG  L+TADHGNAE MV  ++ G P          T+HT  PVP I + G     PG   +V  R D   G LA++A T + +     P++
Sbjct:  396 NPDMVGHTGQMKATIQALEAVDRCVGQLLQSVLQMGGTLLITADHGNAECMV--DEQGNP---------WTAHTTNPVPFILVEGEGVKIPGHGTDVALRDD---GCLADIAPTILEILRLPQPAE 507          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus clausii (strain KSM-K16) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E TV A +A DE +  ++DA+ + GG  ++TADHGNA+++V     G+P         +T+HT   VP+ +   G    +  R D   G LA++A T ++L G + P +
Sbjct:  401 NPDMVGHSGMLEPTVKAIEAVDECLGRVVDALLQKGGAAIITADHGNADEVV--TLDGKP---------MTAHTTNKVPVIVTEKG----ITLRED---GILADLAPTVLDLLGADKPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD++A + A +  D  +   ++A+ K GG  +VTADHGN E MV     G            T+HT  PVP I + GP         A L  G LA++A T + L     P +
Sbjct:  394 NPDMVGHTGDLKAAMAAVEEVDRGLGRAVEAVTKAGGAMIVTADHGNCETMVDPETGGPH----------TAHTTNPVPVILVNGPA-------GARLHAGRLADLAPTLLQLMQLPQPEE 497          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PELCD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 46/119 (38.66%), Postives = 61/119 (51.26%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPS 364
            N DMVGHTG   A + A +  D  V  ++DA+   GG  L+TADHGN E M   +  G P          T+HT  PVP+ +  P     VK R    NG LA++A T + L G + P+
Sbjct:  401 NPDMVGHTGVESAAIAAMETVDACVGRVVDAVLNAGGSLLITADHGNCEQMA--DAKGAP---------HTAHTSNPVPVILVDPD-RTGVKLR----NGILADLAPTLLELMGIDKPA 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAP 361
            N DMVGHTG + A + AC+  D+ +  I DAI K GG+ LVTADHGN E M       +P+    +    TSHTL  VP+ +              + +G LA++A T + L G + P
Sbjct:  398 NPDMVGHTGSLSAAIKACETVDQGLGRINDAIVKAGGVLLVTADHGNCETM------RDPVTGGAH----TSHTLNVVPVILAHAR-------GETIHDGRLADLAPTMLALMGVKQP 498          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_ANASP8.347e-1339.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VESOH1.090e-1235.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSE141.090e-1240.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MICAN1.090e-1238.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METBU1.090e-1239.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP41.090e-1238.102,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACSK1.090e-1236.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS41.424e-1237.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PELCD1.424e-1238.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX1.424e-1238.142,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
back to top