CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ENTS8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 46/121 (38.02%), Postives = 62/121 (51.24%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +A V A +A D  +  +  A+E  GG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T + L G E P +
Sbjct:  401 PNGDMVGHTGVFDAAVAAVEALDNCIAQVTRAVEAAGGQMLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KAVKAVDGGKLSDIAPTLLTLMGMEIPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_DESAP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulforudis audaxviator (strain MP104C) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD+ A + A +  DE +  +++A+   GG  LV+ DHGNAE M   +  G P         LT+HT  PVP+ I G  +         L  G L +VA T ++L G   P +
Sbjct:  398 NPDMVGHTGDLSAAIKAVETVDECLGRVVEAVLARGGTVLVSGDHGNAEHMC--DAEGCP---------LTAHTCNPVPLLIIGEAVAGR-----SLRPGSLQDVAPTILDLLGLPKPPE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 8801) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAI---GGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG++EA + A +  D  +  ++ +I K+GG  L+TADHGNAE MV  N  G P          T+H+  PVP+ I    G  +P +        NG LA++A T + +     P +
Sbjct:  396 NPDMVGHTGNLEAAIQAIETVDNCLGRLLTSISKMGGTVLITADHGNAELMVDEN--GNP---------WTAHSTNPVPLIIVEGEGRKIPGHGGAVDLADNGRLADIAPTILEILQLPKPEE 507          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis (strain Al Hakam) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  +++AI    G+ L+TADHGNA++  +    GEP         +T+HT  PVP  +         K   +L  GG L ++A T + L G E P +
Sbjct:  400 NCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADE--ELTSEGEP---------MTAHTTNPVPFIV--------TKNDVELREGGILGDIAPTMLTLLGVEQPKE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_YERE8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.860e-12
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTGD +A V A +  D  ++ ++ A++ V G  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     N + +A +  G L+++A T ++L   E P +
Sbjct:  401 PNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVQAVDGQLLITADHGNAEQM-RDPATG---------QAHTAHTSLPVPLIYVG-----NKEVKA-VEGGKLSDIAPTMLSLMEMEIPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.860e-12
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +ATV A ++ DE +  +++AI++V G  L+TADHGNAE M+     G          V T+HT  PVP+   G      ++F+     G L+++A T + L     P++
Sbjct:  398 PNCDMVGHTGVYDATVKAVESLDECIGKVVEAIKEVDGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---SKAIEFK---EGGKLSDLAPTMLALTDTAIPAE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SERP5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Serratia proteamaculans (strain 568) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.860e-12
Identity = 49/123 (39.84%), Postives = 66/123 (53.66%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +A V A +  D  +  +++A++ V G  L+TADHGNAE M +   +G         Q  T+HT  PVP I IG P         A   NGG L+++A T + L G E P +
Sbjct:  401 PNGDMVGHTGVYDAAVKAVETLDNCIAQVVEAVKAVDGQLLITADHGNAEQM-RDPATG---------QAHTAHTSLPVPLIYIGKP---------ASAVNGGKLSDIAPTMLALMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 49/121 (40.50%), Postives = 61/121 (50.41%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +  D  V  I +A++KVGG  L+TADHGN E M                Q  T+HT +PVP    G       K  A +  GG LA+VA T + L G   P++
Sbjct:  397 NGDMVGHTGVFEAAVKAVETLDTCVGRITEALQKVGGEALITADHGNVEQMEDECTG----------QAHTAHTCEPVPFIYVG-------KRPARIREGGVLADVAPTLLTLMGLPQPAE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDA-IEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSDYE 373
            N DMVGHTG+ +AT +ACK  DE +K I +  + +  GI ++TADHGNAE M+          KDG  QV   HT   VPI I       N+K + + P   +A VA T ++L   E P + E
Sbjct:  418 NCDMVGHTGNNKATEIACKTLDEQLKRIHEEFVLRHNGIMVITADHGNAEIMID---------KDG--QVNKKHTTSLVPIII----TDLNIKLKQNDPE--IAKVAPTILDLMNIEIPKEME 523          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG IEA + A +  D  V  +ID I ++GG  ++TADHGNAE M+               + +T+H++ PVP  + G    ++ K    L  G L+++A T +++   E P +
Sbjct:  396 NPDMVGHTGSIEAAIKAVETVDTCVGKLIDKIVELGGSAIITADHGNAEYMLDPETG----------KTVTAHSINPVPFIVVGQEY-ESAKL---LDGGRLSDIAPTILDMMKLEKPEE 501          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_ENTS81.424e-1238.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESAP1.424e-1237.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP81.424e-1236.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAH1.424e-1236.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERE81.860e-1237.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM1.860e-1237.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SERP51.860e-1239.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY2.429e-1240.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS2.429e-1240.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD62.429e-1235.002,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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