CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 49/124 (39.52%), Postives = 63/124 (50.81%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAP 361
            N DMVGHTG + ATV A +  D  +  ++ AI + GG  L+TADHGNAE M   N  GEP          T+HT   VP I + G     PG    +  R D   G L+++A T + L G   P
Sbjct:  396 NPDMVGHTGKMGATVEAIETVDRCLGRLVSAINRAGGTALITADHGNAEYMWDEN--GEP---------WTAHTTNLVPFIVVEGERRKLPGFGTEIPLRED---GRLSDIAPTILQLLGLPQP 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SYNE7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus elongatus (strain PCC 7942) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 49/124 (39.52%), Postives = 63/124 (50.81%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAP 361
            N DMVGHTG + ATV A +  D  +  ++ AI + GG  L+TADHGNAE M   N  GEP          T+HT   VP I + G     PG    +  R D   G L+++A T + L G   P
Sbjct:  396 NPDMVGHTGKMGATVEAIETVDRCLGRLVSAINRAGGTALITADHGNAEYMWDEN--GEP---------WTAHTTNLVPFIVVEGERRKLPGFGTEIPLRED---GRLSDIAPTILQLLGLPQP 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_GLOVI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gloeobacter violaceus GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPI------AIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG+ +ATV A +  D  +  +++A  + GG  L+TADHGNAE M   ++ G P          T+HT  PVP        +  PG   +V+ RA    G L ++A T + + G   P++
Sbjct:  400 NPDMVGHTGNFDATVKAVETVDACIGRLVEACVRAGGTMLLTADHGNAELM--WDEQGNP---------WTAHTTNPVPFILIESEGLKIPGWGTDVQLRA---GGSLGDIAPTILEILGLPQPAE 511          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACHD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus halodurans GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI   GG  ++TADHGNA+++V     G+P         +T+HT   VP+ +   GL      R D   G LA+++ T ++L G + P++
Sbjct:  401 NPDMVGHSGMLEPTIKAVEAVDECLGKVVDAILAKGGAAVITADHGNADEVV--TLEGKP---------MTAHTTNKVPVIVTEEGL----NLRED---GILADLSPTVLDLLGGKQPAE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ACHLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acholeplasma laidlawii (strain PG-8A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIID-AIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAP 361
            N DMVGHTG+IEAT  A +   E V  + D  I ++GG+ ++ ADHGNAE M  R++ G+P          T+HT   VP+ +   G+         L +G L +VA T ++L G E P
Sbjct:  400 NPDMVGHTGNIEATKKAVEVTVECVGKVTDFIINELGGVAIILADHGNAEQM--RDQEGKP---------HTAHTTNLVPVVVTKKGI--------KLNSGALCDVAPTLLDLLGIEKP 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ACAM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acaryochloris marina (strain MBIC 11017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPG--LP---DNVKFRADLPNGGLANVAXTFINLHGYEAPSDYEPSLI 385
            NTDMVGHTG ++AT+ A +  D  +  +++ +  VGG  L+TADHGNAE M   +++G P          T+HT  PVP I + G G  +P    +V+ RAD   G LA++A T +++     P +   S +
Sbjct:  398 NTDMVGHTGMMDATIQAVETVDGCLGKLLNQVINVGGTLLITADHGNAERM--WDETGNP---------WTAHTTNPVPFILVEGEGRKIPAHGTDVQLRAD---GRLADIAPTILDILQLPKPEEMTGSTL 515          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_STAS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++D I ++GG  ++TADHGN+ DMV         L D + Q +T+HT  PVP+ +      D V  R     G L ++A T ++L   + P D
Sbjct:  395 NPDMVGHSGMLEPTIKAIEAVDECLGEVVDKITEMGGHAIITADHGNS-DMV---------LTDDD-QPMTTHTTNPVPVIV----TKDGVTLR---ETGRLGDLAPTLLDLLNVDQPED 496          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ACIBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acidobacteria bacterium (strain Ellin345) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADL-PNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G I  T+ A +  D  +  + + + K GG  L+TADHGNAE M+     G            T+HT  PVP       + ++ K R  L P+G L +++ T + + G   P +
Sbjct:  418 NADMVGHSGKIPPTITAVETVDSCLGRVYNVVRKKGGAMLITADHGNAEQMIDPETGGPQ----------TAHTTNPVPFIF----VAEDAKKRFSLRPDGALQDISPTMMGILGIPQPKE 524          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_VIBF1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +A V A ++ DE +  +++AI++V G  L+TADHGNAE M+     G          V T+HT  PVP+   G      V+F+     G L+++A T + L     P++
Sbjct:  398 PNCDMVGHTGVYDAAVKAVESLDECIGKVVEAIKEVDGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---SKAVEFK---EGGKLSDLAPTMLALTDTAIPAE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRA-DLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG   A V A +  D  +  I  A+  V G  +VTADHGNA++M          L  G  +V T+HT  PVP  +     P++  FR+  L  GG LA+VA T + + G   P +
Sbjct:  402 NPDMVGHTGVFAAAVAAVECVDRCLGRIEQAVRSVNGYLVVTADHGNADEM----------LVPGTNEVWTAHTKNPVPFILVA---PNHSPFRSVALRTGGRLADVAPTILEIMGLPQPEE 510          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_SYNP63.172e-1239.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNE73.172e-1239.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLOVI3.172e-1235.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHD3.172e-1236.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACHLI3.172e-1238.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACAM13.172e-1237.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAS14.143e-1237.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACIBL4.143e-1233.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBF15.410e-1237.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP5.410e-1238.522,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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