CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_YERPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTGD +A V A +  D  ++ ++ A++   G  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     N   +A +  G L+++A T ++L   E P +
Sbjct:  401 PNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVKAADGQLLITADHGNAEQM-RDPATG---------QAHTAHTSLPVPLIYVG-----NKAVKA-VEGGKLSDIAPTMLSLMEMEIPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_YERPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTGD +A V A +  D  ++ ++ A++   G  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     N   +A +  G L+++A T ++L   E P +
Sbjct:  401 PNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVKAADGQLLITADHGNAEQM-RDPATG---------QAHTAHTSLPVPLIYVG-----NKAVKA-VEGGKLSDIAPTMLSLMEMEIPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_YERPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTGD +A V A +  D  ++ ++ A++   G  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     N   +A +  G L+++A T ++L   E P +
Sbjct:  401 PNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVKAADGQLLITADHGNAEQM-RDPATG---------QAHTAHTSLPVPLIYVG-----NKAVKA-VEGGKLSDIAPTMLSLMEMEIPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_YERP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTGD +A V A +  D  ++ ++ A++   G  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     N   +A +  G L+++A T ++L   E P +
Sbjct:  401 PNGDMVGHTGDYDAAVKAVETLDNCIEQVVAAVKAADGQLLITADHGNAEQM-RDPATG---------QAHTAHTSLPVPLIYVG-----NKAVKA-VEGGKLSDIAPTMLSLMEMEIPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PROMP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG++ A + A +  D  +  I++A  ++GG  L+TADHGNAE M  +   GEP          T+HT+  VP I I G     P + + +  R    N GLA++A T + L     P +
Sbjct:  407 NPDMVGHTGNMAAAIKAIETVDRCIGKIVNATGEMGGSILITADHGNAELM--KGPDGEP---------WTAHTINKVPLIFIEGEKRKIPNMGNEIYLR---ENAGLADIAPTLLQLLNLPIPKE 518          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG+ EATV A +  D+ +  +  A++  GG  L+TADHGNAE+M            +   Q  T+HT +PVP    G G      +      G L ++A + + L G   P +
Sbjct:  397 NADMVGHTGNFEATVQAIECLDQCMHQVWQALKNNGGKLLITADHGNAEEM----------FSEATNQAHTAHTSEPVPFLYVGGG------WHFTHAEGSLIDIAPSLLALLGITPPPE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_COXBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD  AT  A +  D+ +K II A++ VGG  L+TADHGNAE M    K+ +P          T+HT   VP+   G       +F  ++  G L +VA T + L G E P +
Sbjct:  406 NPDMVGHTGDETATREAIQVIDDCLKRIITALQSVGGEALITADHGNAEKMFD-EKTNQP---------HTAHTSNLVPLIYVG----REAQFCKEV--GALDDVAPTLLYLMGLEKPRE 509          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_COXBR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD  AT  A +  D+ +K II A++ VGG  L+TADHGNAE M    K+ +P          T+HT   VP+   G       +F  ++  G L +VA T + L G E P +
Sbjct:  406 NPDMVGHTGDETATREAIQVIDDCLKRIITALQSVGGEALITADHGNAEKMFD-EKTNQP---------HTAHTSNLVPLIYVG----REAQFCKEV--GALDDVAPTLLYLMGLEKPRE 509          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_COXBN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD  AT  A +  D+ +K II A++ VGG  L+TADHGNAE M    K+ +P          T+HT   VP+   G       +F  ++  G L +VA T + L G E P +
Sbjct:  406 NPDMVGHTGDETATREAIQVIDDCLKRIITALQSVGGEALITADHGNAEKMFD-EKTNQP---------HTAHTSNLVPLIYVG----REAQFCKEV--GALDDVAPTLLYLMGLEKPRE 509          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACME (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus megaterium GN=gpmI PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINL 343
            N DMVGH+G +E TV A +  DE +  I+DAI   GG  ++TADHGNA++++     G P         +T+HT  PVP+ +   GL    + R D   G L ++A T + L
Sbjct:  401 NPDMVGHSGMLEPTVKAIETVDECLGKIVDAILAKGGTAIITADHGNADEVI--TLEGNP---------MTAHTTNPVPVIVTKQGL----ELRED---GILGDLAPTMLTL 494          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_YERPN1.205e-1136.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPE1.205e-1136.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPA1.205e-1136.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERP31.205e-1136.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMP1.205e-1136.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPC1.205e-1135.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBU1.205e-1140.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBR1.205e-1140.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBN1.205e-1140.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACME1.205e-1138.392,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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