CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_STAAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain COL) GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++D I  + G  ++TADHGN++ ++  +            Q +T+HT  PVP+ +   G    V  R     G L ++A T ++L   E P D
Sbjct:  395 NPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDD-----------QPMTTHTTNPVPVIVTKEG----VTLR---ETGRLGDLAPTLLDLLNVEQPED 496          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PORYE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra yezoensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 48/135 (35.56%), Postives = 68/135 (50.37%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPI--------AIGGPGLPDNVKFRADLPNGGLANVAXTFIN-LHGYEAPSDYEPSLI 385
            N DM+GHTG ++ T+ + +  D  +  ++DA+ K+ G  ++TADHGNAE M      G P          T+HT   VP+        AI G G    VK R    NG LA++A T ++ LH  + P     SLI
Sbjct:  399 NADMLGHTGKLKETIQSIETVDRCITELLDAVSKLNGTLIITADHGNAECMF--TDEGNP---------CTAHTTNLVPLILIEGEQEAISGHG--GQVKLR---NNGSLADIAPTILDILHLKKPPEMTGKSLI 517          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma gallisepticum GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 48/125 (38.40%), Postives = 61/125 (48.80%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPS--DYEP 376
            N DMVGHTG+ EAT+   +A D  +  ++   +K       TADHGNAE+M+           D N Q +T HT   VP +I  P    NVKF      G LANVA T +     + P   D EP
Sbjct:  394 NPDMVGHTGNYEATLKGLEALDHEIGRLLADAKKNNITVFFTADHGNAEEMI-----------DENNQKVTKHTTNVVPFSITDP----NVKFTK--KEGILANVAPTILKYLEIQIPEEMDQEP 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CHRSD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G+ +A V A +A D+ +  +I+AIE+ GG  LVTADHGNAE MV   ++G P          T+HT   VP+    P     +   AD  +G L ++A T + +     P +
Sbjct:  411 NGDMVGHSGNFDAAVKAIEAVDDCLGRVIEAIERAGGECLVTADHGNAEQMV-HPETGNP---------QTAHTTFQVPLIYVTPRQGATL---AD--DGSLCDLAPTLLTMMHEPVPEE 515          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_RUTMC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=gpmI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 40/120 (33.33%), Postives = 61/120 (50.83%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            NTDMVGH+G + AT+ A +  D  + II  A+  + G  L+TADHGNAE M+               +V T+HT  PVP+        D     ++   G L+++A T + +   E P++
Sbjct:  397 NTDMVGHSGKLNATIKAVETIDSCLGIIHKAMFAISGEILITADHGNAEQMINPKTH----------EVHTAHTNNPVPLIFVSERKAD----ISEPEKGALSDIAPTLLAMMDIEKPNE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_MOOTA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Moorella thermoacetica (strain ATCC 39073) GN=gpmI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD+ A + A +  DE +  I+ A+ +     L+TADHGNAE+M  R   GEP          T+HT   VP       L D+    A L  G L +VA T +++   + P++
Sbjct:  400 NPDMVGHTGDLAAAIAAVETVDECIGRIVQAMAERRAPLLLTADHGNAEEM--REPDGEP---------HTAHTSNLVPFI-----LVDDRYRGASLREGALEDVAPTVLDILHIQQPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPS 364
            N DMVGHTGD +A + A +A D  +  ++ A+   G    +TADHGNA+D+      G P          T+HT  PVP     P   D    R     G L ++A T +++ G + P+
Sbjct:  396 NPDMVGHTGDFDAAIEAVEAVDRELGRLVPALNDAGAHAFLTADHGNADDL------GTP------ADPHTAHTFNPVPFVSLPPASGDTAAVR---DGGALRDIAPTLLDVLGIDRPT 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=gpmI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 46/120 (38.33%), Postives = 59/120 (49.17%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG +EA V A +  DE V  I D I +  G   +TADHGNAE M+  + +G P          T+HT   VP          N      L NG LA++A T +   G E P++
Sbjct:  398 NPDMVGHTGVVEAAVKAIETVDECVGKIADKILEKNGCLFITADHGNAETMIDFS-TGNP---------YTAHTTHEVPFV-----WVANDTEGKKLSNGKLADIAPTMLVQLGLEVPTE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ANTSP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Antithamnion sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADL-PNGGLANVAXTFINLHGYEAPSD 367
            N DM+GHTG++ AT+ A +  D+ ++ ++  IE    I ++T+DHGNA+ M          L D N +  TSH++ PVP  +    + +  K + +L  +G LA++A T +++     P++
Sbjct:  397 NPDMIGHTGNMNATIEAIEIVDQCIEKVLHTIEDTNNILIITSDHGNADYM----------LTDEN-KPCTSHSINPVPFIL----INNRQKKQTNLHSHGSLADIAPTILDILNINIPNE 502          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_STAAC5.982e-1133.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORYE5.982e-1135.562,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGA5.982e-1138.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRSD5.982e-1137.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RUTMC7.813e-1133.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MOOTA7.813e-1136.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA7.813e-1133.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB87.813e-1138.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANTSP7.813e-1131.402,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
back to top