CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G          + T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  398 PNADMVGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG----------IHTAHTSLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA-IGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTGD++A + AC+A D+ +  ++ A++  GG  +VTADHGN E MV     G            T+HT   VP+A +GGP           L +G LA++A T + L G + P +
Sbjct:  395 NPDMVGHTGDLDAAIKACEAVDQGLGEVVAALKDAGGAMIVTADHGNCELMVDPETGG----------AHTAHTTNLVPVALVGGPE-------GTALKDGRLADLAPTLLALMGLDQPEE 498          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHISS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK  A    G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---DKNVKAVA---GGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHIFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella flexneri GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK  A    G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---DKNVKAVA---GGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHIBS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK  A    G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---DKNVKAVA---GGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHESR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T ++L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRD--------ATIDEGGKLSDVAPTILHLMGETIPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T ++L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRD--------ATIDEGGKLSDVAPTILHLMGETIPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHESA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain ANA-3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T ++L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDACIGRVVDALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRD--------ATIDEGGKLSDVAPTILHLMGETIPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB9 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS195) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T + L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDACIGCVVDALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRD--------ATIDEGGKLSDVAPTILTLIGEAIPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  +++AI+KVGG  L+TADHGNAE M                Q  T+HT + VP          +V  +    +GG L++VA T ++L G E P++
Sbjct:  397 PNGDMVGHTGNFDAAVKACEAVDTCIGRVVEAIKKVGGDCLITADHGNAEKMADETTG----------QAHTAHTSELVPFW--------HVGQKTTARSGGTLSDVAPTMLHLMGMEQPAE 500          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_VIBVU1.521e-1440.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST1.521e-1438.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHISS1.521e-1442.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIFL1.521e-1442.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIBS1.521e-1442.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESR1.521e-1438.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM1.521e-1438.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESA1.521e-1438.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB91.521e-1438.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA61.521e-1439.342,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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