CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:1363..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---DKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ECOK1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O1:K1 / APEC GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---DKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA   A +A DE +  ++ A+ +  G+ L+TADHGN+E M+     G            T+HT  PVP+ + G G   +VK R     G LA++A T +++ G+E P +
Sbjct:  400 NPDMVGHTGVFEAAKAAIEAIDECLGKVVPAVLEQNGVVLITADHGNSEQMIDYETGGP----------FTAHTTNPVPLIVIGLG---DVKLR----EGRLADLAPTMLDILGFEKPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +A D+ +  I++A++++GG+ L+TADHGNAE M+  +K+GEP          T+HT  PV     G G    VK    L  G L ++A T + L G   P +
Sbjct:  402 NMDMVGHTGIFEAAVKAVEAVDKCIGRIVEALKEIGGVALITADHGNAEQMID-SKTGEP---------HTAHTSNPVRCIYFGNG---EVK---ALKKGKLCDLAPTLLELIGIPKPQE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_DINSH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Dinoroseobacter shibae (strain DFL 12) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 48/113 (42.48%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGGLANVAXTFINL 343
            N DMVGHTGD+EA   AC A D  +   + A+E  GG  +VTADHGN E M+     G            T+HTL PVP I +GGP         A L  G LA++A T ++L
Sbjct:  394 NPDMVGHTGDLEAAKAACTAVDTGLGRALAALEVAGGAMIVTADHGNCETMIDPETGG----------THTAHTLNPVPVILVGGPE-------GATLAPGRLADLAPTILHL 489          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +A D+ +  I++ +++ GG+ L+TADHGNAE+M+   K+GEP          T+HT  PV     G     N + +A L NG L +VA T + L G   P +
Sbjct:  412 NMDMVGHTGIFEAAVKAVEAVDKCIGRIVEVLKEKGGVALITADHGNAEEMIDL-KTGEP---------HTAHTSNPVKCIYFG-----NSEIKA-LRNGKLCDVAPTILELLGIPKPQE 515          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHIDS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +A D  V  +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVEALDHCVDEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---DKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T ++L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDACIGRVVEALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFVFVGRD--------ATIDKGGKLSDVAPTILHLMGESIPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SALTY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---EKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SALPB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---EKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_ECOL51.987e-1442.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOK11.987e-1442.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH1.987e-1437.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC1.987e-1440.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DINSH2.595e-1442.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF2.595e-1440.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIDS3.389e-1442.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON3.389e-1437.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALTY3.389e-1440.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALPB3.389e-1440.502,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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