CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:1363..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SALPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi A GN=gpmI PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---EKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +A V AC+A D  V  ++ A+++V G  L+TADHGNAE M+     G          + T+HT  PVP    G          A++ +GG L ++A T +NL   E P++
Sbjct:  396 PNGDMVGHTGVYDAAVKACEAVDSCVGKVVAALKEVDGECLITADHGNAEQMIDPVTGG----------IHTAHTNLPVPFIYVGR--------NAEMASGGRLCDIAPTMLNLMDMEIPAE 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SALTI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhi GN=gpmI PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA + A +A D  ++ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQM-RDPATG---------QEHTAHTNLPVPLIYVG---EKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SALCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA + A +A D  +  +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G     NVK    +  G L+++A T ++L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAIKAVEALDNCIDQVTKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVG---EKNVK---AVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_THEEB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermosynechococcus elongatus (strain BP-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINL 343
            N+DMVGHTG + AT+ A +  D  V ++++A  KVGG  L+TADHGNAE M+          +DGN    T+HT  PVP I + G     PG   +V  R D   G LA++A T + +
Sbjct:  395 NSDMVGHTGKLAATIQAIETVDRCVGVLVEAATKVGGTLLITADHGNAEYMID---------EDGN--PWTAHTTNPVPFILVEGEKRKVPGHGGHVILRKD---GCLADIAPTILEI 498          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEHT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGH+G   A V AC+A D  +  ++ A+ K GG  L+TADHGNAE M          LK G  Q  T+HT +PVP I +G        K         L++VA T ++L G E P++
Sbjct:  401 PNGDMVGHSGVFAAAVKACEAVDHCIGRVVAALNKYGGEALITADHGNAEQMAN--------LKTG--QAHTAHTSEPVPFIYVGRDATASEGK--------ALSDVAPTMLHLMGMEQPTE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P++
Sbjct:  402 NGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P++
Sbjct:  402 NGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa (strain PA7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 48/121 (39.67%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +  D  +  I++A++KVGG  L+TADHGN E M   +            Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P++
Sbjct:  402 NGDMVGHTGVFEAAVKAVECLDTCMGRIVEALDKVGGEALITADHGNVEQMEDESTG----------QAHTAHTCEPVPFVYVG-------KRKLSIREGGVLADVAPTMLTLMGLEQPAE 505          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T + L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFIFVGRD--------ATIDKGGKLSDVAPTILQLIGETIPAE 503          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_SALPA3.389e-1440.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYIN4.426e-1438.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALTI5.780e-1440.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALCH5.780e-1440.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THEEB7.550e-1441.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEHT7.550e-1440.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAE7.550e-1439.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAB7.550e-1439.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA77.550e-1439.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESW9.860e-1437.702,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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