CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  +++A+ KVGG  ++TADHGNAE M                Q  T+HT + VP    G          A +  GG L++VA T + L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALAKVGGECIITADHGNAEQMTDETTG----------QAHTAHTSELVPFIFVGRD--------ATIDKGGKLSDVAPTILQLIGETIPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 49/120 (40.83%), Postives = 64/120 (53.33%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G  EA V A +  D  V  I++A+EKVGG  L+TADHGN E M   +            Q  T+HT +PVP    G     ++K R     G LA+VA T + L G E P++
Sbjct:  397 NGDMVGHSGVFEAAVKAVECLDTCVGRIVEALEKVGGEALITADHGNVEQMADESTG----------QAHTAHTTEPVPFIYVG---KRDLKVR---EGGVLADVAPTMLKLLGLEKPAE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 51/126 (40.48%), Postives = 70/126 (55.56%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG++EA V A +A D  +  ++  I K+GG  L+TADHGNAE M  R++ G P          T+HT  PVP I + G     PG   NV  R D   G LA++A T +++     P++
Sbjct:  396 NPDMVGHTGNMEAAVQAIEAVDRCLGRLLGCINKMGGTVLITADHGNAEYM--RDEEGNP---------WTAHTTNPVPFILVEGEKRKIPGHGANVVLRND---GRLADIAPTILDILQLPQPNN 507          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_AERS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aeromonas salmonicida (strain A449) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.860e-14
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG  +A V AC+A D  V  + +A+ +VGG  L+TADHGNAE M          L +   Q  T+HT  PVP+   G         +A++  GG L+++A T + L G   P +
Sbjct:  396 PNGDMVGHTGVFDAAVKACEAVDHCVGRVTEALAEVGGECLITADHGNAEKM----------LDEETGQAHTAHTNLPVPLIYFGR--------KAEVLEGGKLSDLAPTMLTLMGLPVPPE 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_ENT38 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sp. (strain 638) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            PN DMVGHTG +EA V A +  D  V+ +  A+E VGG  L+TADHGNAE M  R+ S          Q  T+HT  PVP+   G       K    +  G L+++A T + L G E P +
Sbjct:  400 PNGDMVGHTGVMEAAVKAVETLDHCVEQVAKAVESVGGQLLITADHGNAEQM--RDPS--------TGQAHTAHTNLPVPLIYVGE------KSLKAVEGGKLSDIAPTMLTLMGMEIPKE 504          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. tomato GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +EA + A +  D  V  I DA+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P +
Sbjct:  397 NGDMVGHSGIMEAAIKAVEYLDVCVGRITDALEKVGGEALITADHGNVEQMT----------DDATGQAHTAHTSEPVPFVYVG-------KRQLKVREGGVLADVAPTMLQLLGMEKPQE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_GEOKA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus kaustophilus GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI   GGI ++TADHGNA+         E L  DG  Q  T+HT  PVP+ +   G    +K R     G L ++A T ++L G   P +
Sbjct:  401 NPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNAD---------EVLTPDGKPQ--TAHTTNPVPVIVTKKG----IKLR---DGGILGDLAPTMLDLLGLPQPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus subtilis GN=gpmI PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI   GG  ++TADHGNA+ ++   +SGEP          T+HT  PVP+ +   G+         L  GG L ++A T ++L G E P +
Sbjct:  401 NPDMVGHSGMVEPTIKAIEAVDECLGEVVDAILAKGGHAIITADHGNADILI--TESGEP---------HTAHTTNPVPVIVTKEGI--------TLREGGILGDLAPTLLDLLGVEKPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI   GGI ++TADHGNA+         E L  DG  Q  T+HT  PVP+ +   G    +K R     G L ++A T ++L G   P +
Sbjct:  401 NPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNAD---------EVLTPDGKPQ--TAHTTNPVPVIVTKKG----IKLR---DGGILGDLAPTMLDLLGLPQPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    2 LPNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            + N DMVGHTGD  A V A +A DEA+  I+  I+ V G  +VTADHGN E M+   ++G+P         LTSHT  PVP +  G  G P        L +GG L +V  T +++ G E P +
Sbjct:  406 IANPDMVGHTGDFNACVQAAEAVDEALGEILATIKAVDGEAIVTADHGNME-MLFNEETGKP---------LTSHTTFPVPFVYFGKKGYP--------LKDGGALCDVIPTLLDMMGIEKPEE 511          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_SHEPC9.860e-1437.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPF9.860e-1440.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP79.860e-1440.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AERS49.860e-1439.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ENT381.288e-1340.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSESM1.682e-1341.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOKA1.682e-1339.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACSU1.682e-1338.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST1.682e-1339.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THICR2.197e-1341.132,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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