CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:1363..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SYMTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Symbiobacterium thermophilum GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 47/118 (39.83%), Postives = 64/118 (54.24%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAP 361
            N DMVGHTG +EA + A +A DE +  ++DA+   GG  ++ ADHGN + MV   ++G P          T+HTL PVP       L D+ +  A L  G LANVA T + + G   P
Sbjct:  399 NPDMVGHTGVLEAAIRAVEAVDECLGQVVDALLAKGGAAVIIADHGNCDQMVD-YETGAP---------HTNHTLNPVPCI-----LVDDQRLDAKLKPGVLANVAPTLLEIIGLPKP 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGHTG+ +A V AC+A D  +  ++ A+ KV G  L+TADHGNAE M   +            Q  T+HT + VP    G          A + +GG L+++A T ++L G   P++
Sbjct:  400 PNGDMVGHTGNFDAAVKACEAVDACIGRVVAALAKVNGECLITADHGNAEQMTDESTG----------QAHTAHTSELVPFIYVGRD--------ASIKDGGRLSDIAPTMLSLMGQPVPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEU2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gpmI PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +EA + A +  D  V  I +A+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G       K +  +  GG LA+VA T ++L G E P +
Sbjct:  397 NGDMVGHSGIMEAAIKAVECLDVCVGRIAEALEKVGGEALITADHGNVEQMT----------DDSTGQAHTAHTSEPVPFVYVG-------KRQLKVRQGGVLADVAPTMLHLLGMEKPQE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG  EA V A +A D  V  I++A+ KVGG  L+TADHGN E M                Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P++
Sbjct:  398 NGDMVGHTGVFEAAVKAVEALDSCVGRIVEALGKVGGEALITADHGNVEQMEDECTG----------QAHTAHTSEPVPFIYVG-------KRKVTVREGGVLADVAPTMLKLLGLEKPAE 501          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSDYEPSLI 385
            PN DMVGHTG  +A V AC+A D  V  ++ A +  GG  L+TADHGNAE M       +P+    + Q  T+HT +PVP+   G       +  +   +G L++++ + ++L G E P +   S++
Sbjct:  406 PNGDMVGHTGSFDAAVKACEAVDTCVGRVVKAAQDNGGECLITADHGNAEQM------QDPV----SGQAHTAHTCEPVPLIYVG-------RNASPAASGTLSDISPSVLHLMGMEQPQEMTGSVL 515          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGG G     K   +L +GG LA+VA T + L   E   D
Sbjct:  421 NPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYG---KDAIELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGHTG I A + AC+A D  +  ++ AI + GG+ LV ADHGNAE M+     G            T+HT  P P   IGG G     K   +L +GG LA+VA T + L   E   D
Sbjct:  421 NPDMVGHTGSIPAVIKACEAVDAGLARVVPAILERGGVALVIADHGNAEQMIDPETGGPH----------TAHTTNPAPCFLIGGAGYG---KDAIELRHGGRLADVAPTLLELLELEPSPD 529          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_VIBSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio splendidus (strain LGP32) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSDYEPSLI 385
            PN DMVGHTG  +A V A ++ DE +  +++AI++  G  L+TADHGNAE MV     G          + T+HT  PVP+   G     +V+F+     G L+++A T ++L G + P +    +I
Sbjct:  398 PNCDMVGHTGVYDAAVKAVESLDECLGKVVEAIKEADGQLLITADHGNAEMMVNPETGG----------IHTAHTNLPVPLIYVG---NKDVEFK---EGGKLSDLAPTMLSLSGIDIPVEMSGDVI 508          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_LAWIP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = 2
Query:    2 LPNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            L N DMVGHTG+I+A++ A +A D  V  I  A+ +  G +++TADHGN E+M+  +KSG+P          T+H+  PVP+     G P N+K      +G L ++A T +++     P++
Sbjct:  395 LANPDMVGHTGNIKASISALEAVDNCVGRIEKAVAEQHGCFILTADHGNVEEML--DKSGQP---------QTAHSCNPVPLIAIYDGKPLNLK-----ESGKLGDIAPTILSIWDVSIPNE 500          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_HAHCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Hahella chejuensis (strain KCTC 2396) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 46/120 (38.33%), Postives = 65/120 (54.17%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G  +A + A +  D+ +K I +A+ +VGG  L+TADHGNAE MV           D N Q  T HT  PVP+   G   P N+  + D   G L ++A + ++L   E P +
Sbjct:  402 NGDMVGHSGVYDAAMKAAECIDQCLKRIAEALNEVGGQCLITADHGNAEQMV-----------DENGQPHTQHTTGPVPLIYIG---PKNISLKED---GRLCDIAPSLLDLMELEKPRE 504          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_SYMTH2.197e-1339.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO2.197e-1336.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEU22.197e-1340.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE42.197e-1341.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COLP32.197e-1335.432,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY2.197e-1340.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA2.197e-1340.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBSL2.869e-1336.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LAWIP2.869e-1336.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HAHCH2.869e-1338.332,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
back to top