CX293862

Overview
NameCX293862
Unique NameCX293862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_AKKM8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG +EA + AC+A D A++  +  + ++GG  L+TADHGNAE M  RN+ G P          T+HT   V +      + D+ K +  L +G LA+VA T ++L G + P++
Sbjct:  400 NGDMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHM--RNEDGSP---------NTAHTTNLVDLIY----VADD-KDQVTLSDGILADVAPTLLSLMGLKQPAE 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPS 364
            N DMVGHTG ++A   A    D  +  ++DA+ + GG  L+TADHGNAE           L++  + Q  T+HT  PVP I + G     PG  +++  R D   GGLA++A T + +   E P+
Sbjct:  406 NPDMVGHTGVMDAATEAIATVDRCIGRLLDAVGRRGGTMLITADHGNAE-----------LMQGPDGQAWTAHTTNPVPCILVEGEQRKLPGHGNDISLRED---GGLADIAPTLLQILNLEQPA 516          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_NOSP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINL 343
            N DMVGHTG I+AT+ A +  D  +  +++++ K GG  ++TADHGNAE M+  +  G P          T+HT  PVP I + G     PG   NV+ R+D   G L+++A T + +
Sbjct:  396 NPDMVGHTGQIDATITAIETVDRCLGRLLESVIKAGGTTIITADHGNAEYML--DDGGNP---------WTAHTTNPVPFILVEGEKVKIPGYGTNVELRSD---GKLSDIAPTILEI 499          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINL 343
            N DMVGHTGD EA V A +  D  V  I++A+   GG  L+TADHGNAE M + + +GEP          T+HT  PV     G G    VK    L NG L+++A T ++L
Sbjct:  408 NMDMVGHTGDFEAAVKAVETVDNCVGRIVEALRTAGGAALITADHGNAEQM-ENSHTGEP---------HTAHTSNPVKCIYTGNG---EVK---ALENGKLSDLAPTLLDL 503          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_GEOTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI + GGI ++TADHGNA++++     G+P          T+HT  PVP+ +   G    ++ R D   G L ++A T ++L G   P +
Sbjct:  401 NPDMVGHSGMLEPTIKAVEAVDECLGKVVDAILEKGGIAIITADHGNADEVL--TPEGKP---------QTAHTTNPVPVIVTKHG----IELRKD---GILGDLAPTMLDLLGLPQPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG+ EAT+ A +  D  +  ++ A+   GG  L+ ADHGNAE           L+ D N    T+HT  PVP I + G     PG   +VK R+   NG LA+VA T + + G   P +
Sbjct:  395 NPDMVGHTGNYEATIRALETVDRCLGRLLAAVVDAGGTTLILADHGNAE-----------LMWDENGNPWTAHTTNPVPCILVEGERRKIPGCGGDVKLRS---NGTLADVAPTLLEILGLPQPPE 506          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_SHEFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 2
Query:    5 PNTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD-GNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            PN DMVGH+G+ +A V AC+A D  +  +++A+ KV G  L+TADHGNAE M           KD  N Q  T+HT   VP    G          A + +GG L+++A T + L G   P +
Sbjct:  399 PNGDMVGHSGNFDAAVKACEAVDACIGRVVEALAKVDGECLITADHGNAEKM-----------KDPSNGQAFTAHTSNLVPFVYVGRD--------AVIKDGGRLSDIAPTMLTLMGQSIPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_EHRCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ehrlichia chaffeensis (strain Arkansas) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM--VKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGGLANVAXTFINLHGYEAPSD 367
            N DMVGHTG+IEAT  A  A D+ +  I++ I+    + ++TADHGNAE+M  VK N               T+HTL PVP  I       N   +  L NG L +VA T + +   E P +
Sbjct:  388 NADMVGHTGNIEATKQAITALDQCLNKILNCIQGTNYVLVITADHGNAEEMFDVKNN------------MPYTAHTLNPVPFII------CNYSKQIRLKNGRLCDVAPTILEILNIEKPKE 491          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus pumilus (strain SAFR-032) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E T+ A +A DE +  ++DAI   GG  ++TADHGNA+ ++   + G+P          T+HT  PVP+ +   G        A L  GG LA+++ T ++L G E P +
Sbjct:  401 NPDMVGHSGMLEPTIKAIEAVDECLGAVVDAILAKGGHAIITADHGNADVLI--TEEGKP---------HTAHTTNPVPVIVTKKG--------ATLREGGILADLSPTLLDLLGVEKPKE 502          
BLAST of CX293862 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    8 NTDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDNVKFRADLPNGG-LANVAXTFINLHGYEAPSD 367
            N DMVGH+G +E TV A +A DE +  ++DAI   GG  ++TADHGNA+ ++   + G+P          T+HT  PVP+ +   G+         L  GG L ++A T ++L G E P +
Sbjct:  401 NPDMVGHSGKVEPTVKAIEAVDECLGEVVDAILAKGGYAIITADHGNADVLI--TEEGKP---------HTAHTTNPVPVIVTKEGV--------TLREGGILGDLAPTLLDLLGVEKPKE 502          
The following BLAST results are available for this feature:
BLAST of CX293862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
GPMI_AKKM82.869e-1339.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX3.747e-1336.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NOSP73.747e-1338.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA3.747e-1342.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOTN3.747e-1336.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB4.893e-1338.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEFN4.893e-1338.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_EHRCR4.893e-1338.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACP24.893e-1337.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD4.893e-1337.192,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC05001G07SK FlavSen1 Citrus clementina cDNA clone C05001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293862 ID=CX293862; Name=CX293862; organism=Citrus clementina; type=EST; length=520bp
CCTACCAAATACTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGATGCA
ATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAATGC
TGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGGATG
GCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATTGCA
ATCGGAGGTCCTGGACTGCCAGATAATGTCAAGTTCCGCGCAGATCTCCC
TAATGGTGGGCTCGCCAATGTAGCANCAACTTTTATCAATCTCCATGGAT
ATGAAGCACCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGACGAC
TGAGAAGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATTTTA
TAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTTTGG
GGTCTTGAATTCATTTTGAT
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