CX293866

Overview
NameCX293866
Unique NameCX293866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD+DGSG ID  EF  +M  K+ + DS+EE+ +AF + D+D NG ISA +++ I   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD+DGSG ID  EF  +M  K+ + DS+EE+ +AF + D+D NG ISA +++ I   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+++AF + D+D NG ISA +++ I   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_PYTSP (Calmodulin OS=Pythium splendens PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+++AF + D+D NG ISA +++ I   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+++AF + D+D NG ISA +++ I   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N DEF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM3_ORYSJ (Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CAM3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF ++M  K+ + DS+EEL +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N DEF+++M
Sbjct:   52 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYDEFVKVM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD+DGSG ID  EF  +M  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ E DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:   52 MINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_MOUSC (Calmodulin OS=Mougeotia scalaris PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF ++M  K+ + DS+EEL +AF + D+D NG ISA D + +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADWRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVKMM 146          
The following BLAST results are available for this feature:
BLAST of CX293866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CALM_TRYBG5.423e-2148.42Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV... [more]
CALM_TRYBB5.423e-2148.42Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2[more]
CALM_SACJA5.423e-2148.42Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1[more]
CALM_PYTSP5.423e-2148.42Calmodulin OS=Pythium splendens PE=2 SV=1[more]
CALM_PHYIN5.423e-2148.42Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]
CALM_PAXIN5.423e-2148.42Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM3_ORYSJ5.423e-2147.37Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM_TRYCR7.082e-2147.37Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2[more]
CALM_SUBDO7.082e-2149.47Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_MOUSC7.082e-2149.47Calmodulin OS=Mougeotia scalaris PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001G12SK FlavSen1 Citrus clementina cDNA clone C05001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293866 ID=CX293866; Name=CX293866; organism=Citrus clementina; type=EST; length=621bp
GAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACAAGA
CTGGCAATCATGCACGAACATATGCATATTTGATTTAACAGGATCTCGAA
GCATTCCCATATATATACCTTAGACCTACACAGATCAATTAAATAACAAA
AGACAGCTACATATTAAATAAATTTGCAAGCATAAAATTTAGCCAAAACA
ATGAACCATCACTTATCAATCCATGATTATTTTCCTTTCAACTTGGCACA
AAGTATATACTACAGCTACCATGCATCAACAACCCTTCTTCATCCTTATG
GATCTCTAGTACCCGAATGTGGTCCTCTTCATCATACGGATAAACTCATC
AGCGTTTACTTCTCCATCATGATCTCTGTCTGCTTCCTCTACCATCTCAT
GAATCTCTCGGTCAGTGAAGTTTACACCCAGCTCCCTCGCAATACGCTTA
ATATCTCCAGCTGATATCTTTCCATTGTTATCTTGGTCAATGATATGGAA
TGCTTTCATGAGCTCTTCCTTAGAATCCCTTTCTCCAATCTTAGCCGTCA
TCATATGTTCAAATTCATCTAAATCAATGGCACCACTTCCATCCTTGTCG
ACATCTGCAATCATTTGATTG
back to top