CX293866

Overview
NameCX293866
Unique NameCX293866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX293866_ssr1 microsatellite CX293866_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_GECJA (Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ E DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ E DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:   41 MINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMM 135          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI ++D DG+G I+  EF ++M  ++ E D+ EEL +AF + D+D NG ISA +++ +   LG   TD E+ +M++EAD D DG+VN DEF+RMM
Sbjct:   75 MITEIDSDGNGTIEFSEFLNLMANQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEFVRMM 169          
The following BLAST results are available for this feature:
BLAST of CX293866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CALM_GECJA9.250e-2148.42Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV... [more]
CALM_ELEEL9.250e-2148.42Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_DANRE9.250e-2148.42Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3[more]
CALM_CTEID9.250e-2148.42Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2... [more]
CALM_CHICK9.250e-2148.42Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2[more]
CALM_BOVIN9.250e-2148.42Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2[more]
CALM_ANAPL9.250e-2148.42Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2[more]
CALMB_HALRO9.250e-2149.47Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]
CALMB_ARBPU9.250e-2149.47Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CML11_ARATH1.208e-2046.32Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC05001G12SK FlavSen1 Citrus clementina cDNA clone C05001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293866 ID=CX293866; Name=CX293866; organism=Citrus clementina; type=EST; length=621bp
GAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACAAGA
CTGGCAATCATGCACGAACATATGCATATTTGATTTAACAGGATCTCGAA
GCATTCCCATATATATACCTTAGACCTACACAGATCAATTAAATAACAAA
AGACAGCTACATATTAAATAAATTTGCAAGCATAAAATTTAGCCAAAACA
ATGAACCATCACTTATCAATCCATGATTATTTTCCTTTCAACTTGGCACA
AAGTATATACTACAGCTACCATGCATCAACAACCCTTCTTCATCCTTATG
GATCTCTAGTACCCGAATGTGGTCCTCTTCATCATACGGATAAACTCATC
AGCGTTTACTTCTCCATCATGATCTCTGTCTGCTTCCTCTACCATCTCAT
GAATCTCTCGGTCAGTGAAGTTTACACCCAGCTCCCTCGCAATACGCTTA
ATATCTCCAGCTGATATCTTTCCATTGTTATCTTGGTCAATGATATGGAA
TGCTTTCATGAGCTCTTCCTTAGAATCCCTTTCTCCAATCTTAGCCGTCA
TCATATGTTCAAATTCATCTAAATCAATGGCACCACTTCCATCCTTGTCG
ACATCTGCAATCATTTGATTG
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