CX293866

Overview
NameCX293866
Unique NameCX293866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDSEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM2_ARATH (Calmodulin-2/3/5 OS=Arabidopsis thaliana GN=CAM2 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF ++M  K+ + DS+EEL +AF + D+D NG ISA +++ +   LG   TD E+ EM++EAD D DG++N +EF+++M
Sbjct:   52 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIKEADVDGDGQINYEEFVKVM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF ++M  K+ + DS+EEL +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF+++M
Sbjct:   52 MINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR6_PARTE (Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1f PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.061e-20
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = -2
Query:  315 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 617
            QMI+D+D DGSG ID  EF  +MTA+I ERDSK ++ K F++ D +  G I+  D++++A+ELG    D E+ EM++ AD D D +V  ++F  +M + TF
Sbjct:   82 QMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGFITLKDLRKVAKELGETMDDSELQEMIDRADSDGDTQVTFEDFYNIMTKKTF 182          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.061e-20
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  MM  K+ + DS+EE+ +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG+VN +EF+ MM
Sbjct:   59 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 153          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.061e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF ++M  K+ + DS+EEL +AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF+++M
Sbjct:   52 MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.061e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.061e-20
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -2
Query:  330 MIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 614
            MI +VD DG+G ID  EF  +M  K+ + D++EEL++AF + D+D NG ISA +++ +   LG   TD E+ EM+ EAD D DG++N +EF++MM
Sbjct:   52 MINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
The following BLAST results are available for this feature:
BLAST of CX293866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CALM_HETTR1.578e-2046.32Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]
CALM_CIOIN1.578e-2048.42Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM_AGABI1.578e-2047.37Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CALM2_ARATH1.578e-2046.32Calmodulin-2/3/5 OS=Arabidopsis thaliana GN=CAM2 P... [more]
CALM1_ARATH1.578e-2046.32Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CATR6_PARTE2.061e-2044.55Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1... [more]
CALM_STRIE2.061e-2048.42Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_SPIOL2.061e-2046.32Calmodulin OS=Spinacia oleracea PE=1 SV=2[more]
CALM_PROMN2.061e-2046.32Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PFIPI2.061e-2046.32Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05001G12SK FlavSen1 Citrus clementina cDNA clone C05001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293866 ID=CX293866; Name=CX293866; organism=Citrus clementina; type=EST; length=621bp
GAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACAAGA
CTGGCAATCATGCACGAACATATGCATATTTGATTTAACAGGATCTCGAA
GCATTCCCATATATATACCTTAGACCTACACAGATCAATTAAATAACAAA
AGACAGCTACATATTAAATAAATTTGCAAGCATAAAATTTAGCCAAAACA
ATGAACCATCACTTATCAATCCATGATTATTTTCCTTTCAACTTGGCACA
AAGTATATACTACAGCTACCATGCATCAACAACCCTTCTTCATCCTTATG
GATCTCTAGTACCCGAATGTGGTCCTCTTCATCATACGGATAAACTCATC
AGCGTTTACTTCTCCATCATGATCTCTGTCTGCTTCCTCTACCATCTCAT
GAATCTCTCGGTCAGTGAAGTTTACACCCAGCTCCCTCGCAATACGCTTA
ATATCTCCAGCTGATATCTTTCCATTGTTATCTTGGTCAATGATATGGAA
TGCTTTCATGAGCTCTTCCTTAGAATCCCTTTCTCCAATCTTAGCCGTCA
TCATATGTTCAAATTCATCTAAATCAATGGCACCACTTCCATCCTTGTCG
ACATCTGCAATCATTTGATTG
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