CX293872

Overview
NameCX293872
Unique NameCX293872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig872 contig Ccv1_Contig872:37..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293872 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  149 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 460
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CX293872 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   71 RRTNVFDPVS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 460
            +RT  +DP      L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CX293872 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  185 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 460
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CX293872 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 2
Query:  119 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 457
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CX293872 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  149 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 460
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CX293872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH3.170e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
SP21_STIAU4.140e-1334.07Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS178_ORYSJ4.140e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ9.222e-1336.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH4.577e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC05001H08SK FlavSen1 Citrus clementina cDNA clone C05001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293872 ID=CX293872; Name=CX293872; organism=Citrus clementina; type=EST; length=544bp
GCACGAGGTGAGCATTTAATTAGCGTCCCAGTTTGCCATAATGTCACTCA
TTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCA
TTAGATGTATGGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAA
CGCGCCGTCTTCGGCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTG
ACTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGG
CTGAGGAAAGAAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCA
GATAAGCGGAGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGC
ATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCC
GACAATGCTAAGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCT
CACAGTCACCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTA
TTGAGATCTCTGGCTAAGTGATAACTGTAAATGTTTTCAAGATA
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