CX293875

Overview
NameCX293875
Unique NameCX293875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_THESM (Phenylalanyl-tRNA synthetase alpha chain OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pheS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.817e-21
Identity = 61/167 (36.53%), Postives = 85/167 (50.90%), Query Frame = 3
Query:   21 KKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            K+  + LT E ++ G WK +EFK +N +A  +    G   P      +++   ++MGF EM   + +E+ FWNFDALFQPQ HPARD  DT+ L+ P       E  VERVK  HE            +W    A   + R H TA+S+R L    +    P KYF+
Sbjct:  202 KEEVSILTPELIKSGGWKNVEFKHFNIHAPVKRLYPGKKQPYRTFLDKIRRKLIEMGFIEMTVESLIETQFWNFDALFQPQNHPARDWTDTYQLKYPKYGFLPDETLVERVKASHEHGWITGSRGWGYKWDPRTAMLLMPRAHATALSARQLGKGVQ---IPGKYFA 365          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_PYRKO (Phenylalanyl-tRNA synthetase alpha chain OS=Pyrococcus kodakaraensis GN=pheS PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.817e-21
Identity = 59/167 (35.33%), Postives = 86/167 (51.50%), Query Frame = 3
Query:   21 KKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            KK  + LT E ++ G W+E+EF++++  A  +    G   P      +++   ++MGF EM  ++ +E+ FWNFDALFQPQ HPAR+  DT+ L+ P       E+ V RVK  HE             W  E A   + R H TA+ +R L    E    P KYF+
Sbjct:  200 KKEVSVLTPELIKSGKWREVEFRKFDIKAPVRRIYPGKKQPYRAFLDKIRRRLIEMGFIEMTVDSLIETQFWNFDALFQPQNHPAREWTDTYQLKYPKVGSLPDEELVARVKAAHEHGGDTGSRGWGYVWSPERAMLLMPRAHGTALDARQLAKGVE---IPGKYFT 363          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_METS5 (Phenylalanyl-tRNA synthetase alpha chain OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pheS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.806e-21
Identity = 58/152 (38.16%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   39 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELP-EDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEK 491
            +T E L  G W+E EFK YN  A       G  H      +++KD+ + +GF E+ + +FVE+ F+NFD LFQPQ HPAR+ HD+F +E       LP  D V +VK VHE            W  + A + +LR+ TTAV++R+L    ++
Sbjct:  183 VTHEMLTTGSWREYEFKPYNVEANPPFFPIGKTHYFRDFIEKVKDLMVGLGFVEV-SGDFVETEFFNFDMLFQPQDHPAREIHDSFVIEGKG---NLPGSDLVRKVKEVHE------KWWRYSWSEDNARRLVLRSQTTAVTARVLSGAPKR 324          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_AERPE (Phenylalanyl-tRNA synthetase alpha chain OS=Aeropyrum pernix GN=pheS PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.277e-21
Identity = 61/164 (37.20%), Postives = 89/164 (54.27%), Query Frame = 3
Query:   30 ATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPST-TRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            A  LTR+ L+ G+W+ L FK YN  A+         H L +  ++L+DI  ++GF E+     VE   +NFD LFQ Q HPAR+ HD+ +++ P         D VERV  VHE            W  E A++ +LR+ TTAVS+R+   LA +P  P ++F+
Sbjct:  198 AAVLTRDMLKSGEWRRLRFKPYNVKAEPPRVLPARRHFLAEFIERLRDILRELGFREV-RGPLVELELFNFDVLFQAQDHPAREIHDSLWIKSPRRGDLSGYSDLVERVASVHE------RGWKYRWSPEVASRYILRSQTTAVSARI---LATRPNPPARFFT 351          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_UNCMA (Phenylalanyl-tRNA synthetase alpha chain OS=Uncultured methanogenic archaeon RC-I GN=pheS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.068e-20
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   39 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVH-EXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            LT E +  G W+   F++++ +   Q   GG  H L      +K   ++MGF+EM     V++ F+  D LF PQ HPAR   D F L+EP     LP++ VERV+RVH +           EW    A K +LR HTT++++R L A   KP  P+KYFS
Sbjct:  197 LTPEMIATGSWQGKTFRKFDVSLPVQTEYGGRKHILRMGMDAVKRTLIEMGFKEME-GPMVDAEFYVNDLLFMPQDHPARTHWDQFNLKEPKYIHSLPQNLVERVRRVHRDGGSSGSLGWNYEWDETIARKLVLRGHTTSLTARYL-AKHSKP--PQKYFS 353          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_PYRAE (Phenylalanyl-tRNA synthetase alpha chain OS=Pyrobaculum aerophilum GN=pheS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 3
Query:   15 KRKKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            K  +V T +T E++  G W+    K ++ N +         H   +    ++++ + +GFEE+     +E  FWNFDALFQ Q HPAR+ HDTF+++        PE  +E V RVHE           +W R++A   +LRT TTA +   ++ALAE+     K F+
Sbjct:  178 KPAEVKTVITSEDIATGRWRNYTLKPFDLNIEPPEYPAPVPHFFNEFLDYVREVMIGLGFEEV-RGPVLEVEFWNFDALFQAQDHPAREVHDTFYVQWSGPLETPPEHLMESVGRVHE------EKWRYKWDRKKALNPVLRTQTTATT---IRALAERGDGEYKVFT 335          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_PYRCJ (Phenylalanyl-tRNA synthetase alpha chain OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=pheS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 3
Query:   15 KRKKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            K  +V T LT E++  G W+E   K ++ + +         H   +    ++++ + +GFEE+     +E  FWNFDALFQ Q HPAR+ HDTF++       E P   +E V RVHE           +W  ++A   +LRT TTA +   ++ALAE+     K F+
Sbjct:  177 KPAEVKTALTSEDIATGRWREYYLKPFDLSIEPPQYPAPVPHFFNEFLNYVREVMVGLGFEEV-RGPILEVEFWNFDALFQAQDHPAREVHDTFYVHWDGPREEPPRHLMEAVGRVHE------EKWRYKWSPQKALNLVLRTQTTATT---IRALAERGEGAYKVFT 334          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_PYRAR (Phenylalanyl-tRNA synthetase alpha chain OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=pheS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   24 KVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            +V T +T  ++  G W+    K ++   +         H   +    ++++ + +GFEE+     +E  FWNFDALFQ Q HPAR+ HDTF++         PE  +E V RVHE           +W RE+A   +LRT TTAV+   ++ALAE+     K F+
Sbjct:  180 EVKTAITSADIATGRWRTYLLKPFDLGVEPPEYPAPVPHFFNEFLDYVREVMIGLGFEEV-RGPVLEVEFWNFDALFQAQDHPAREVHDTFYIRWEGPIEAPPEHLLEAVGRVHE------EKWRYKWSREKALNPVLRTQTTAVT---IRALAERGDGEYKVFT 334          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_TREPS (Phenylalanyl-tRNA synthetase alpha chain OS=Treponema pallidum subsp. pallidum (strain SS14) GN=pheS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.890e-17
Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 3
Query:   39 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYF 515
            LT E L+ G WK    + YN +        G  +      + +KD  + +GF+E      VE+ FWN DALF PQ HPARD HD ++L+ P+    +PE ++ RV   HE             + R+   + LLR+  TA+S+R L         P KYF
Sbjct:  263 LTVECLKSGAWKTQHLRRYNVHIPPARIIPGRSNAYADFLEHIKDRLVALGFQEFD-GPLVETDFWNADALFMPQFHPARDIHDVYYLKHPTHAPTIPEPFLSRVAATHERGADSGSLGWRYSFDRDFTRRLLLRSQGTALSARHLPT----AHIPGKYF 417          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_TREPA (Phenylalanyl-tRNA synthetase alpha chain OS=Treponema pallidum GN=pheS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.890e-17
Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 3
Query:   39 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHE-XXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYF 515
            LT E L+ G WK    + YN +        G  +      + +KD  + +GF+E      VE+ FWN DALF PQ HPARD HD ++L+ P+    +PE ++ RV   HE             + R+   + LLR+  TA+S+R L         P KYF
Sbjct:  263 LTVECLKSGAWKTQHLRRYNVHIPPARIIPGRSNAYADFLEHIKDRLVALGFQEFD-GPLVETDFWNADALFMPQFHPARDIHDVYYLKHPTHAPTIPEPFLSRVAATHERGADSGSLGWRYSFDRDFTRRLLLRSQGTALSARHLPT----AHIPGKYF 417          
The following BLAST results are available for this feature:
BLAST of CX293875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SYFA_THESM2.817e-2136.53Phenylalanyl-tRNA synthetase alpha chain OS=Thermo... [more]
SYFA_PYRKO2.817e-2135.33Phenylalanyl-tRNA synthetase alpha chain OS=Pyroco... [more]
SYFA_METS54.806e-2138.16Phenylalanyl-tRNA synthetase alpha chain OS=Metall... [more]
SYFA_AERPE6.277e-2137.20Phenylalanyl-tRNA synthetase alpha chain OS=Aeropy... [more]
SYFA_UNCMA4.068e-2037.89Phenylalanyl-tRNA synthetase alpha chain OS=Uncult... [more]
SYFA_PYRAE5.875e-1933.33Phenylalanyl-tRNA synthetase alpha chain OS=Pyroba... [more]
SYFA_PYRCJ1.709e-1833.33Phenylalanyl-tRNA synthetase alpha chain OS=Pyroba... [more]
SYFA_PYRAR3.808e-1833.33Phenylalanyl-tRNA synthetase alpha chain OS=Pyroba... [more]
SYFA_TREPS1.890e-1733.75Phenylalanyl-tRNA synthetase alpha chain OS=Trepon... [more]
SYFA_TREPA1.890e-1733.75Phenylalanyl-tRNA synthetase alpha chain OS=Trepon... [more]

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Properties
Property NameValue
Genbank descriptionC05001H11SK FlavSen1 Citrus clementina cDNA clone C05001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293875 ID=CX293875; Name=CX293875; organism=Citrus clementina; type=EST; length=518bp
CTAATTATGCTCCCAAAAGGAAGAAAGTTGCTACAGATTTGACTCGAGAG
AACCTTCAGAAGGGTGATTGGAAGGAATTGGAGTTCAAAGAGTACAACTT
CAATGCTAAAGGACAGCCTGCGGAAGGTGGCCATCTTCACCCACTGCTCA
AGGTGCGGAAGCAATTGAAGGACATATTTCTCCAGATGGGTTTTGAGGAG
ATGCCGACAAACAATTTTGTTGAAAGCAGCTTCTGGAACTTTGATGCATT
GTTCCAGCCACAACAACACCCTGCCCGTGATTCTCATGATACCTTCTTTC
TGGAAGAACCTTCCACTACAAGGGAACTACCAGAAGATTATGTTGAGCGG
GTGAAGCGTGTGCACGAGTCTGGTGGTTATGGGTCCAGAGGATATGGATA
TGAGTGGAAAAGAGAGGAAGCAAACAAAAACCTTCTGCGAACTCATACAA
CTGCTGTCTCTTCCAGGATGCTTAAGGCGCTAGCTGAGAAACCTTTTGCC
CCAAAAAAGTATTTCTCC
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