CX293875

Overview
NameCX293875
Unique NameCX293875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_SULTO (Phenylalanyl-tRNA synthetase alpha chain OS=Sulfolobus tokodaii GN=pheS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.499e-17
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   39 LTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            LT E L  G+WK+   +EYN  A       G  H   +  ++L+D+   +GF+E+  +++VE  F+NFD LFQ Q HPAR+ HD+F +       +  E  ++RVK++HE            W    + + +LR+ TTA ++R+   LA +P  P + F+
Sbjct:  181 LTPELLASGEWKKYALREYNVEAYPPFYPIGKKHFFKEFLERLRDLMRDLGFKEV-YSDYVEIEFYNFDLLFQAQDHPAREIHDSFAISGKGKLTD--EKLIQRVKQIHE------RGWKYNWDVNISMRLMLRSQTTATTARV---LASRPKPPIRVFT 328          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_SULAC (Phenylalanyl-tRNA synthetase alpha chain OS=Sulfolobus acidocaldarius GN=pheS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = 3
Query:   33 TDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNLLRTHTTAVSSRMLKALAEKPFAPKKYFS 518
            T LT E L+  DWK+ + +EYN  A          H      ++LKD+  ++GF E+    ++E   +NFD LFQ Q HPAR+ HD+F ++      +  E  ++ +K +HE            W  + A + +LR+ TTAV++R+   L+ +P  P K FS
Sbjct:  179 TQLTSELLRSKDWKKYKIREYNVEALPPYFPLAKKHFFRDFIEKLKDVMKELGFTEVNAG-YIEMELYNFDLLFQAQDHPAREIHDSFRVDGLGKIDD--ERLLKEIKEMHE------KGWKYSWDPQIAKRLVLRSQTTAVTARI---LSSRPSVPFKGFS 328          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_BORBU (Phenylalanyl-tRNA synthetase alpha chain OS=Borrelia burgdorferi GN=pheS PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 3
Query:   33 TDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTRELPEDYVERVKRVHEXXXXXXXXXXXEWKREEANKNL-LRTHTTAVSSRML 473
            T LT E L+   ++  +F+ YN +        G  +  L    ++KD  + +GF+E      VE+ F+N DALF PQ HP+RD  D +++ +PS    LPE Y   VK  HE               E+ +K L LRTH T +S++ L
Sbjct:  226 TKLTPEILKNKTYENKKFRAYNIHIPSAKTFIGRANSYLDYISKIKDKLVGLGFQEFD-GPLVETEFFNNDALFMPQFHPSRDIKDVYYISDPSMQESLPEPYFSNVKLAHETGYATGSRGWRYSFSEDLSKRLVLRTHGTVLSAKQL 372          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_THENN (Phenylalanyl-tRNA synthetase alpha chain OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=pheS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    6 YAPKRKKVATDLTRENLQKGDWKELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEE 308
            ++ K+K++   L RE ++K           +    G   + GH HP+LKV ++++ IF+ MGF+ +     +E+++ NFDAL  P+ HPARD HD+F++ +
Sbjct:   70 FSEKKKQIEELLERERMEK--------MRVDVTLPGARRKVGHSHPVLKVMEEIERIFVSMGFDVVEGPE-IETTWHNFDALNTPEWHPARDEHDSFYITD 161          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_FERNB (Phenylalanyl-tRNA synthetase alpha chain OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pheS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  129 GHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTR 323
            GHLH L KVR +L+DIF+ MGF  +     VE+ ++NFDAL  P+ HPARD HD+F+++     R
Sbjct:  107 GHLHILTKVRNELEDIFISMGFSVVEGPE-VETPWFNFDALNTPEWHPARDEHDSFYIDNEHLLR 170          
BLAST of CX293875 vs. ExPASy Swiss-Prot
Match: SYFA_BACCN (Phenylalanyl-tRNA synthetase alpha chain OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pheS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   18 RKKVATDLTRE--NLQKGDWK-ELEFKEYNFNAKGQPAEGGHLHPLLKVRKQLKDIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEEPSTTR 323
            R+ + T L  +  NL+K   + +L  +  +    G+P E G  HPL  V +Q++D+F+ MG+E +     VE  ++NF+AL  P+ HPARD  DTF++ E +  R
Sbjct:   65 REAIQTRLEEKVSNLEKAVMEAKLASETIDVTLPGRPVETGCHHPLTAVVEQIEDVFIGMGYE-VAEGTEVEKDYYNFEALNLPKDHPARDMQDTFYITEETLLR 168          
The following BLAST results are available for this feature:
BLAST of CX293875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SYFA_SULTO5.499e-1733.13Phenylalanyl-tRNA synthetase alpha chain OS=Sulfol... [more]
SYFA_SULAC4.655e-1632.72Phenylalanyl-tRNA synthetase alpha chain OS=Sulfol... [more]
SYFA_BORBU4.655e-1633.78Phenylalanyl-tRNA synthetase alpha chain OS=Borrel... [more]
SYFA_THENN4.509e-1133.66Phenylalanyl-tRNA synthetase alpha chain OS=Thermo... [more]
SYFA_FERNB4.509e-1149.23Phenylalanyl-tRNA synthetase alpha chain OS=Fervid... [more]
SYFA_BACCN7.691e-1136.19Phenylalanyl-tRNA synthetase alpha chain OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC05001H11SK FlavSen1 Citrus clementina cDNA clone C05001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293875 ID=CX293875; Name=CX293875; organism=Citrus clementina; type=EST; length=518bp
CTAATTATGCTCCCAAAAGGAAGAAAGTTGCTACAGATTTGACTCGAGAG
AACCTTCAGAAGGGTGATTGGAAGGAATTGGAGTTCAAAGAGTACAACTT
CAATGCTAAAGGACAGCCTGCGGAAGGTGGCCATCTTCACCCACTGCTCA
AGGTGCGGAAGCAATTGAAGGACATATTTCTCCAGATGGGTTTTGAGGAG
ATGCCGACAAACAATTTTGTTGAAAGCAGCTTCTGGAACTTTGATGCATT
GTTCCAGCCACAACAACACCCTGCCCGTGATTCTCATGATACCTTCTTTC
TGGAAGAACCTTCCACTACAAGGGAACTACCAGAAGATTATGTTGAGCGG
GTGAAGCGTGTGCACGAGTCTGGTGGTTATGGGTCCAGAGGATATGGATA
TGAGTGGAAAAGAGAGGAAGCAAACAAAAACCTTCTGCGAACTCATACAA
CTGCTGTCTCTTCCAGGATGCTTAAGGCGCTAGCTGAGAAACCTTTTGCC
CCAAAAAAGTATTTCTCC
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