CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.019e-58
Identity = 105/143 (73.43%), Postives = 128/143 (89.51%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 448
            LT DQI+EFKEAF LFDKDGDGCIT +EL TV+RSL QNPTE EL D+I E D+D NGTI+F EFLNLMA+K++++D+EEELKEAF+VFD DQNG+IS +EL HVM NLGEKLTDEEV++MI+EAD+DGDGQ+NY+EFVK+M+
Sbjct:    6 LTKDQITEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMI 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.295e-56
Identity = 104/145 (71.72%), Postives = 126/145 (86.90%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            LTD+QI+EF+EAF+LFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINE DADGNGTIDF EFL +MARKMKDTD+EEE++EAF+VFD D NG+I+  EL HV+T+LGE+L+ EEV +MIREAD DGDG INYEEF +V+ +K
Sbjct:    6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.832e-55
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            D LT +QI+EF+EAF LFDKDGDG IT+KELGTVM SLGQ+PTEAEL+ M+ E DADG+G+I+F EFL L+ARK++DT +E++++EAFRVFD DQNGFI+  ELRHVM NLG+ L+D+E+ +M+ EAD DGDGQINY EF+KVMMAK
Sbjct:    2 DHLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAK 148          

HSP 2 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 RKMADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSE 256
            RK+ D   +D I   +EAF +FDKD +G IT  EL  VM +LG   ++ EL DM++EAD+DG+G I++ EFL +M  K +    E
Sbjct:   74 RKLRDTGAEDDI---REAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAKRRQNMME 155          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.025e-54
Identity = 99/147 (67.35%), Postives = 126/147 (85.71%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            D LT +QI+EF+EAF LFDKDGDG IT+KELGTVM SLGQ+PTEAEL+ M+ E DADG+G+I+F EFL L+ARK++DT +E+++++AFRVFD DQNGFI+  ELRHVM NL + L+D+E+ +M+ EAD DGDGQINY EF+KVMMAK
Sbjct:    2 DHLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAK 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 2.924e-53
Identity = 98/149 (65.77%), Postives = 128/149 (85.91%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            MA++L++ QI+EFKEAF+LFDKD DG ITTKELGTVMRSLGQNP+E+EL DMINE D + +G+IDFPEFL +MARKMKDTDSE E+ EAF+VFD + +G IS AELRH++T++GEKL+D +VD+MI+EAD + DG+I+ +EF  ++ AK
Sbjct:    1 MAEKLSEQQIAEFKEAFSLFDKDSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADVDQMIKEADTNNDGEIDIQEFTSLLAAK 149          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.233e-52
Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT +Q+  F+EAF LFDK+GDGCIT +EL  V RSLG  PT+ EL DM+ E D DGNG IDF EFL+L+ARKMKD D +EELKEAF V D DQNGFIS  ELR VMTNLGEK+TDEEV++MIREAD DGDGQ+NY+EFV +M
Sbjct:    4 LTSEQMVAFQEAFLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYDEFVIMM 145          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALL_DROME (Calmodulin-related protein 97A OS=Drosophila melanogaster GN=And PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.229e-51
Identity = 95/146 (65.07%), Postives = 124/146 (84.93%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            +LT++QI+EFK+AF  FDK+G G I T+ELGT+MR+LGQNPTEAELQD+I EA+ + NG ++F EF  +MA++M++TD+EEE++EAF++FD D +GFIS AELR VM NLGEK+TDEE+DEMIREAD DGDG INYEEFV ++  K
Sbjct:    3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQK 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML5_ORYSJ (Calmodulin-like protein 5 OS=Oryza sativa subsp. japonica GN=CML5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49
Identity = 94/156 (60.26%), Postives = 119/156 (76.28%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMK------------DTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 448
            ++  +Q++EF+E F  FDKDGDGCIT +EL TV+RSLGQ PT  EL +MI + D DGNGTI+F EFL LMARK                 ++EEL+EAF+VFD DQ+G IS AELRHVM +LGEKLTDEEV++MIREAD+DGDGQ+N++EFV++MM
Sbjct:    7 RVRQEQVAEFRETFAFFDKDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLALMARKASRGGENGGGGDDSGDAADEELREAFKVFDKDQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMMM 162          

HSP 2 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLM 226
            D   D    E +EAF +FDKD DG I+  EL  VM SLG+  T+ E++ MI EAD DG+G ++F EF+ +M
Sbjct:   91 DDSGDAADEELREAFKVFDKDQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMM 161          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 8.241e-48
Identity = 91/149 (61.07%), Postives = 119/149 (79.87%), Query Frame = 2
Query:   11 ADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            A +L++ QI+E K+AF +FD DGDG IT+KEL +VM+SLG+ P++AEL++MI E D DGNGTI++ EF+ +MA++M  TD E+E++EAFRVFD D NG I+ AELR VM N   EKLT EE+ EMIREAD+DGDG +NYEEFVK+M  K
Sbjct:    1 AKELSEKQIAEIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRVFDKDGNGLITAAELRQVMANFSDEKLTSEEISEMIREADIDGDGMVNYEEFVKMMTPK 149          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALL_CAEEL (Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.076e-47
Identity = 91/143 (63.64%), Postives = 115/143 (80.42%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            QLT ++I EF+EAF +FDKDG+G I+TKELG  MRSLGQNPTE E+ +MINE D DGNG I+FPEF  +M R MK+TDS E ++EAFRVFD D NG I+  E R+ M ++G + ++EEVDEMI+E DVDGDG+I+YEEFVK+M
Sbjct:   17 QLTPEEIDEFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQIEFPEFCVMMKRMMKETDS-EMIREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSEEEVDEMIKEVDVDGDGEIDYEEFVKMM 158          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
CML8_ARATH3.019e-5873.43Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CALM_SCHPO6.295e-5671.72Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CML2_ORYSJ1.832e-5568.71Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CML3_ORYSJ2.025e-5467.35Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
CALM_CANAL2.924e-5365.77Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
CML4_ORYSJ3.233e-5269.72Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CALL_DROME1.229e-5165.07Calmodulin-related protein 97A OS=Drosophila melan... [more]
CML5_ORYSJ7.454e-4960.26Calmodulin-like protein 5 OS=Oryza sativa subsp. j... [more]
CABO_LOLPE8.241e-4861.07Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CALL_CAEEL1.076e-4763.64Calmodulin-like protein OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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