CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig445 contig Ccv1_Contig445:80..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML10_ARATH (Calmodulin-like protein 10 OS=Arabidopsis thaliana GN=CML10 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.030e-46
Identity = 94/149 (63.09%), Postives = 120/149 (80.54%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            MA++ T  QISEF+E F+++DK+GDG ITT+E G VMRSLG N T+AELQ+ IN++D DG+GTI+F EFL  MA   KDT SE++LK+ FR+FD D+NGFIS AE+R+V T L  K TDEE+DE+I+ ADVDGDGQINY EF ++MMAK
Sbjct:    1 MANKFTRQQISEFREQFSVYDKNGDGHITTEEFGAVMRSLGLNLTQAELQEEINDSDLDGDGTINFTEFLCAMA---KDTYSEKDLKKDFRLFDIDKNGFISAAEMRYVRTILRWKQTDEEIDEIIKAADVDGDGQINYREFARLMMAK 146          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.481e-44
Identity = 85/146 (58.22%), Postives = 116/146 (79.45%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            M+  LT++QI+EFKEAF LFDKD +G I++ EL TVMRSLG +P+EAE+ D++NE D DGN  I+F EFL LM+R++K  DSE+EL EAF+VFD + +G IS AEL+HV+T++GEKLTD EVD+M+RE   DG G+IN ++F  ++
Sbjct:    1 MSSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.528e-44
Identity = 86/146 (58.90%), Postives = 114/146 (78.08%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            M+  LT++QI+EFKEAF LFDKD  G I+  EL TVMRSLG +P+EAE+ D++NE D DGN  I+F EFL LM+R++K  DSE+EL EAF+VFD + +G IS AEL+HV+T++GEKLTD EVDEM+RE   DG G+IN ++F  ++
Sbjct:    1 MSQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.174e-42
Identity = 80/151 (52.98%), Postives = 114/151 (75.50%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 451
            M   L + QIS+F++AF+LFDK+ DGCI+ +EL TV+  LG  P++ +LQDMI   D DGNGTI+F EFL +M +K+ +    D EEEL++AFR+FD D NGFIS  EL  VM +LGE++T++E+D+M++ AD + DGQ++YEEF +VMM+
Sbjct:    1 MESHLNEQQISDFRDAFSLFDKNNDGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKLYENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMMS 151          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.153e-41
Identity = 93/168 (55.36%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    2 RKMADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMA---------RKMKDT--------DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            + MAD+LTDDQI+E++E+F LFDK+GDG IT KEL TVM SLG+N T+A+LQDM+NE D DG+GTIDFPEFL LMA         R  K T        D   E +EAFRVFD + +G+I+  ELR  M +LGE  T  E+ +MI EAD DGDG I++ EFV VM  K
Sbjct:   88 KTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGK 255          

HSP 2 Score: 162.925 bits (411), Expect = 8.260e-40
Identity = 83/162 (51.23%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKM---------------KDTDSE-EELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            MAD+LTDDQI+E++E+F LFDK+GDG IT KELGT+MRS+G+ PT+A+LQD++NEAD DG+GTIDFPEFL +MA+                 K TD +  E +E+FR+FD + +G I+  ELR VM +LG+  T  ++ +M+ E D+DGDG I++ EF+ +M
Sbjct:    1 MADKLTDDQITEYRESFRLFDKNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLM 162          

HSP 3 Score: 114.39 bits (285), Expect = 3.369e-25
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQ 298
            QLTDDQI EF+EAF +FDK+GDG IT  EL T MRSLG+  T+AELQDMINEADADG+GTI F EF+ +M  KM DT S+   KE +RV +  Q
Sbjct:  183 QLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGKMIDTQSK---KETYRVVNQGQ 273          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 75/145 (51.72%), Postives = 109/145 (75.17%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+TKELGTVMR LGQ PT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD + +G+I + EL  ++ + GE +TDEE++E++++ D + DG+I+++EF+K+M
Sbjct:   14 LSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMM 158          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.732e-38
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT++Q  E +EAF LFD DG G I  KEL   M +LG  P + E+Q MI++ D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD DQ G I+   L+ V   LGE LTDEE+ EMI EAD DGDG+IN EEF ++M
Sbjct:    1 LTEEQKQEXREAFDLFDTDGSGTIDAKELKVXMXALGFEPKKEEIQKMISDIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIM 142          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.319e-37
Identity = 74/145 (51.03%), Postives = 108/145 (74.48%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+TKELGTVMR LGQNPT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL   FR+FD + +GFI   EL  ++   GE +T+EE++++++++D + DG+I+++EF+K+M
Sbjct:   14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMM 158          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.250e-37
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI + D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   21 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 162          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.938e-37
Identity = 73/145 (50.34%), Postives = 108/145 (74.48%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+TKELGTVMR LGQNPT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL   FR+FD + +GFI   EL  ++   GE +T+E+++++++++D + DG+I+++EF+K+M
Sbjct:   15 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 159          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
CML10_ARATH2.030e-4663.09Calmodulin-like protein 10 OS=Arabidopsis thaliana... [more]
CALM_YEAST2.481e-4458.22Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CALM_KLULA5.528e-4458.90Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]
CML6_ORYSJ5.174e-4252.98Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
CML12_ARATH1.153e-4155.36Calmodulin-like protein 12 OS=Arabidopsis thaliana... [more]
TNNC2_RANES1.558e-3851.72Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
CATR_SPESI7.732e-3854.93Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
TNNC2_MELGA1.319e-3751.03Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
CATR_SCHDU2.250e-3753.52Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
TNNC2_CHICK2.938e-3750.34Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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