CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig445 contig Ccv1_Contig445:80..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.011e-37
Identity = 75/142 (52.82%), Postives = 98/142 (69.01%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT++Q  + +EAF LFD DG G I  KEL   MR+LG  P + E++ MI + D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:    1 LTEEQKQDIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 142          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.116e-36
Identity = 74/145 (51.03%), Postives = 106/145 (73.10%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+TKELGTVMR LGQNPT  EL  +I E D DG+GTIDF EFL +M R++K+     SEEEL E FRVFD + +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:   12 LSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.116e-36
Identity = 77/150 (51.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:    2 RKMAD--QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            RK+A   +LT+DQ  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E D +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:   17 RKVAPKPELTEDQKQEVREAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.458e-36
Identity = 73/145 (50.34%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD + +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   12 LSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.458e-36
Identity = 73/145 (50.34%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD + +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   11 LSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGDKNNDGRIDFDEFLKMM 155          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.904e-36
Identity = 73/145 (50.34%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD + +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   12 LSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.904e-36
Identity = 74/148 (50.00%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF EFL +M R MKD     SEEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.904e-36
Identity = 74/148 (50.00%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF EFL +M R MKD     SEEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.904e-36
Identity = 74/148 (50.00%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF EFL +M R MKD     SEEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 74/148 (50.00%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF EFL +M R MKD     SEEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
CATR_TETST5.011e-3752.82Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
TNNC2_ANGAN1.116e-3651.03Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
CETN1_HUMAN1.116e-3651.33Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
TNNC2_RABIT1.458e-3650.34Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]
TNNC2_PIG1.458e-3650.34Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]
TNNC2_HUMAN1.904e-3650.34Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
TNNC1_PIG1.904e-3650.00Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE1.904e-3650.00Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN1.904e-3650.00Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC1_RABIT2.487e-3650.00Troponin C, slow skeletal and cardiac muscles OS=O... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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