CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig445 contig Ccv1_Contig445:80..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 74/148 (50.00%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF EFL +M R MKD     SEEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +LT+DQ  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E D +  G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+K+M
Sbjct:   24 ELTEDQKQEVREAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.242e-36
Identity = 72/145 (49.66%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            L+++ I+EFK AF +FD DG G I+ KELGTVMR LGQ PT+ EL  +I E D DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD + +G+I   EL  +    GE +T+EE++ ++++ D + DG+I+++EF+K+M
Sbjct:   12 LSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTEEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.242e-36
Identity = 73/148 (49.32%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF EFL +M R MKD     +EEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML9_ARATH (Calmodulin-like protein 9 OS=Arabidopsis thaliana GN=CML9 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.451e-36
Identity = 74/148 (50.00%), Postives = 101/148 (68.24%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 451
            MAD  TD+QI EF EAF L DKD DG IT ++L  VM+S+G+NP   +LQ M+++ D  GNG I F +FL +MA+      + +EL E FRVFD D +G IS  EL   M ++G K+T EE + M+READ+DGDG +++ EF K+M+A
Sbjct:    1 MADAFTDEQIQEFYEAFCLIDKDSDGFITKEKLTKVMKSMGKNPKAEQLQQMMSDVDIFGNGGITFDDFLYIMAQNTSQESASDELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHEFSKMMIA 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML13_ARATH (Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.451e-36
Identity = 73/147 (49.66%), Postives = 103/147 (70.07%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            D L+DDQ+S  KEAF LFD DGDG I   ELG +MRSLG NPT+A+L+ +I  A  + +   DF  FL+LMA+ +K    + +L++AF+V D +  GF++ A+LRH++T++GEKL   E DE I+E DV  DG+I YE+F+  M+AK
Sbjct:    4 DGLSDDQVSSMKEAFMLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSII--ASENLSSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLEPNEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.451e-36
Identity = 71/143 (49.65%), Postives = 101/143 (70.63%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +LT+DQ  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   24 ELTEDQKQEIREAFDLFDADGTGTIDIKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.451e-36
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D +G I+  +LR V   LGE LT+EE+ EMI EAD + D +I+ +EF+++M
Sbjct:   22 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALML_DICDI (Calmodulin-like protein OS=Dictyostelium discoideum GN=calB PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.612e-35
Identity = 73/134 (54.48%), Postives = 102/134 (76.12%), Query Frame = 2
Query:   44 FKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +KEAF LFDKD DG IT +ELG VMRS+G NPT+ EL+D+  E D DG+G +DF +F +LM RKMK +DSE ++K+AF+VFD   NG+ +  +L+H +T++GEKLT EE D M+++A    DGQI+ +EFV+V+
Sbjct:   11 YKEAFNLFDKDKDGKITIQELGIVMRSVGSNPTQQELKDIAKEID-DGSGLVDFSKFSSLMTRKMKYSDSEADIKQAFKVFDKKGNGYANIQDLKHTLTSIGEKLTKEEFDNMLKDAKT-VDGQIHVDEFVRVI 142          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.591e-35
Identity = 71/148 (47.97%), Postives = 109/148 (73.65%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +QLT++Q +EFK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+E D DG+GT+DF +FL +M R MKD     +EEEL + FR+FD + +G+I   EL+ ++   GE +T+++++E++++ + + DG+I+Y+EF++ M
Sbjct:   10 EQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFM 157          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
TNNC1_HUMAN2.487e-3650.00Troponin C, slow skeletal and cardiac muscles OS=H... [more]
CETN1_MOUSE2.487e-3651.75Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
TNNC2_MOUSE4.242e-3649.66Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
TNNC1_CHICK4.242e-3649.32Troponin C, slow skeletal and cardiac muscles OS=G... [more]
CML9_ARATH9.451e-3650.00Calmodulin-like protein 9 OS=Arabidopsis thaliana ... [more]
CML13_ARATH9.451e-3649.66Probable calcium-binding protein CML13 OS=Arabidop... [more]
CETN2_MOUSE9.451e-3649.65Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
CATR_CHLRE9.451e-3651.41Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CALML_DICDI1.612e-3554.48Calmodulin-like protein OS=Dictyostelium discoideu... [more]
TNNC1_COTJA3.591e-3547.97Troponin C, slow skeletal and cardiac muscles OS=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
back to top