CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig445 contig Ccv1_Contig445:80..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.691e-35
Identity = 73/142 (51.41%), Postives = 96/142 (67.61%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI + D  G+GTIDF EFL +M  KM + DS EE+ +AF++FD D  GFI+   L+ V   LGE LTDEE+ EM  EAD +GDGQI+ +EF ++M
Sbjct:   22 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML14_ARATH (Probable calcium-binding protein CML14 OS=Arabidopsis thaliana GN=CML14 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.126e-35
Identity = 71/147 (48.30%), Postives = 102/147 (69.39%), Query Frame = 2
Query:   14 DQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            D L++DQ+S  KEAF LFD DGDG I   ELG +MRSLG NPTE++L+ +I   +   +   DF  FL+LMA+ +K    + +L++AF+V D +  GF++ A+LRH++T++GEKL   E DE I+E DV  DG+I YE+F+  M+AK
Sbjct:    4 DGLSNDQVSSMKEAFMLFDTDGDGKIAPSELGILMRSLGGNPTESQLKSIITTENL--SSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLQPSEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.126e-35
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE L+DEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   24 ELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CETN1_BOVIN (Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.001e-35
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI + D +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   24 ELTEEQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMKRMIADVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEDEFLRIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CETN2_HUMAN (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.045e-34
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +LT++Q  E +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG+++ +EF+++M
Sbjct:   24 ELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_NAEGR (Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.971e-34
Identity = 74/148 (50.00%), Postives = 101/148 (68.24%), Query Frame = 2
Query:    2 RKMADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +K+  +LTD+Q  E KEAF LFD DG G I  KEL   MR+LG  P + E++ MI+  D +G+G IDF +FL LM  KM + DS  E+ +AFR+FD D +GFI+ A L+ V  +LGE +TDEE+ EMI EAD    GQI+ E+F+++M
Sbjct:   20 QKVQIELTDEQRQEIKEAFDLFDMDGSGKIDAKELKVAMRALGFEPKKEEIKKMISGID-NGSGKIDFNDFLQLMTAKMSEKDSHAEIMKAFRLFDEDDSGFITFANLKRVAKDLGENMTDEELREMIEEADRSNQGQISKEDFLRIM 166          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML7_ORYSJ (Probable calcium-binding protein CML7 OS=Oryza sativa subsp. japonica GN=CML7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 69/146 (47.26%), Postives = 100/146 (68.49%), Query Frame = 2
Query:   17 QLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            +L+++Q++  +EAF+LFD DGDG I   ELG +MRSLG NPT+A+L+D+   A        DFP FL+LM   ++    +  L++AFRV D D +G +S A+LRHV+T++GEKL   E DE IRE DV  DG I Y++F++ ++AK
Sbjct:    5 ELSEEQVASMREAFSLFDTDGDGRIAPSELGVLMRSLGGNPTQAQLRDIA--AQEKLTAPFDFPRFLDLMRAHLRPEPFDRPLRDAFRVLDKDASGTVSVADLRHVLTSIGEKLEPHEFDEWIREVDVAPDGTIRYDDFIRRIVAK 148          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.489e-33
Identity = 66/142 (46.48%), Postives = 96/142 (67.61%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT  +  E KEAF LFD DG G I  KEL   MR+LG   TE ++  MI + D DG+G IDF EF+++M  K+ + D++EEL +AF++ D D+NG IS  +++ +  +LGE  TD E+ EM+ EAD D DG++N +EF+++M
Sbjct:   20 LTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREMVEEADRDRDGEVNMDEFMRMM 161          

HSP 2 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  245 TDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            T  ++E+KEAF +FDTD +G I   EL   M  LG ++T+E++++MI + D DG G I+++EFV +M AK
Sbjct:   22 TQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAK 91          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.277e-32
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 2
Query:  215 LNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            L +MARKMK+TDSEEE++EAFRVFD D NGFIS AELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    1 LTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          

HSP 2 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    2 RKMADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARK 235
            RKM +    D   E +EAF +FDKDG+G I+  EL  VM +LG+  T+ E+ +MI EAD DG+G +++ EF+ +M  K
Sbjct:    6 RKMKET---DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CATR_ATRNU (Caltractin OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.668e-32
Identity = 66/142 (46.48%), Postives = 93/142 (65.49%), Query Frame = 2
Query:   20 LTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            LT  +  E KEAF LFD DG G I  KEL   MR+LG   TE ++  MI + D DG+G IDF EF ++M  K+ + D++EEL +AFR+ D D NG IS  +++ +   LGE  T +++ +MI EAD D DG++N EEF+++M
Sbjct:   19 LTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDFDEFCHMMTAKIGERDTKEELMKAFRIIDQDNNGKISPEDIQRIAKELGENFTVKDIQDMIEEADRDRDGEVNVEEFLRMM 160          

HSP 2 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  257 EELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            +E+KEAF +FDTD +G I   EL   M  LG ++T+E++++MI + D DG G I+++EF  +M AK
Sbjct:   25 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDFDEFCHMMTAK 90          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
CATR_DUNSA4.691e-3551.41Caltractin OS=Dunaliella salina PE=2 SV=1[more]
CML14_ARATH6.126e-3548.30Probable calcium-binding protein CML14 OS=Arabidop... [more]
CETN2_BOVIN6.126e-3548.25Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CETN1_BOVIN8.001e-3549.65Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1[more]
CETN2_HUMAN1.045e-3448.25Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
CATR_NAEGR3.971e-3450.00Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1[more]
CML7_ORYSJ2.574e-3347.26Probable calcium-binding protein CML7 OS=Oryza sat... [more]
CML20_ARATH7.489e-3346.48Probable calcium-binding protein CML20 OS=Arabidop... [more]
CALM_STRPU1.277e-3282.50Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CATR_ATRNU1.668e-3246.48Caltractin OS=Atriplex nummularia PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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