CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLE_DICDI (Myosin, essential light chain OS=Dictyostelium discoideum GN=mlcE PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 45/140 (32.14%), Postives = 81/140 (57.86%), Query Frame = 2
Query:   41 EFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEE--ELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDG-DGQINYEEFVKVMMA 451
            + +E F++FDKD DG ++ +++G  +RSLG++PT A+++ +  E  A      D     ++  +    T  E+  E+ +AF+  D + +G I  AELR ++T LG+ L+  EVDE+ +E  VD   G ++Y   V  +++
Sbjct:    7 QIQECFSIFDKDNDGKVSVEDIGACLRSLGKSPTMADIEALKTEIGAK---EFDINTLKSIYKKPNIKTPQEQQKEMLDAFKALDKEGHGTIQGAELRQLLTTLGDYLSTAEVDELFKEISVDSTTGAVSYASLVNTIVS 143          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CANB_YARLI (Calcineurin subunit B OS=Yarrowia lipolytica GN=CNB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 48/142 (33.80%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEF 433
            + D+I   ++ F   D D  G + T E  + +  +  NP  + L D+ +E   + +G +DF EF+N ++      + +E+L+ AF+V+D D++G+IS  EL  V+      NL +    + VD+ I EAD DGDG+I++EEF
Sbjct:   18 SSDEIDRLRKRFMKLDTDASGILETNEFLS-LPGVAANPLASRLMDVFDE---NHSGDVDFQEFINGLSTFSTKGNKKEKLRFAFKVYDIDRDGYISNGELFIVLKMMVGNNLKDAQLQQIVDKTIMEADKDGDGKISFEEF 155          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CANB_KLULA (Calcineurin subunit B OS=Kluyveromyces lactis GN=CNB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 2
Query:    5 KMADQLTDD------QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 439
            ++ D L DD      +I   K+ F   DKD  G I   E  ++   +  NP    + ++ +E   D +G +DF EF+  ++      +++ +L+ AFR++D D++G+IS  EL  V+     TNL ++   + VD  I E DVDGDG++++EEF K
Sbjct:    7 RIVDNLLDDTNFDRAEIERLKKRFMKLDKDSSGSIDKTEFMSIP-GVSANPLAKRIIEVFDE---DNSGDVDFQEFITSLSIFSGRGETDAKLRFAFRIYDIDKDGYISNGELFIVLKIMVGTNLEDEQLQQIVDRTIMENDVDGDGKLSFEEFKK 158          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CANB1_NAEGR (Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 50/146 (34.25%), Postives = 84/146 (57.53%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            T  +I +  + F   DKDG+G I+  E   ++  L  NP    ++ +I+  D +G+G+++F EF+  ++      D + +L+ AF+V+D D +G+IS  EL  V+      NL +    + VD+ I EAD DGDG+I++EEF K +
Sbjct:   23 TQKEIKKLYKRFKKLDKDGNGTISKDEF-LMIPELAVNPL---VKRVISIFDENGDGSVNFKEFIAALSVFNAQGDKQRKLEFAFKVYDIDGDGYISNGELFTVLKMMVGNNLSDVQLQQIVDKTILEADEDGDGKISFEEFAKTL 164          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML34_ARATH (Probable calcium-binding protein CML34 OS=Arabidopsis thaliana GN=CML34 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   47 KEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 448
            K  F  FDK+ DG ++  E   V  +     T+ ++     E D DGNG ++  EF + +         E+ LKE F   D D +G I  +E    MT+LG+K T+E   E +R ADVDGDG +N++EF+ +++
Sbjct:    4 KRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI---------EKMLKEVFVFCDVDGDGKIPASESYVTMTSLGKKFTEETSAEKVRAADVDGDGYLNFDEFMALVI 128          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CANB_CANGA (Calcineurin subunit B OS=Candida glabrata GN=CNB1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   29 DQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEF 433
            D+I   ++ F   D+D  G I   E  ++   +  NP    + ++    DAD +G +DF EF+  ++        +E+LK AF+++D D++G IS  EL  V+     +NL +K   + VD  I E D+DGDGQ+++EEF
Sbjct:   21 DEIERLRKRFMKLDRDSSGSIDKNEFMSIP-GVSANPLAGRIMEVF---DADNSGDVDFQEFITGLSIFSGRGSKDEKLKFAFKIYDIDKDGLISNGELFIVLKIMVGSNLDDKQLQQIVDRTIMENDLDGDGQLSFEEF 156          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CDPKO_ARATH (Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16
Identity = 47/153 (30.72%), Postives = 89/153 (58.17%), Query Frame = 2
Query:    2 RKMADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKL-----TDEEVDEMIREADVDGDGQINYEEFVKVM 445
            R +AD L +++I+   + F   D D +G +T +EL   ++ +GQ   + +++ +++ AD DGNG +   EF+ L    +K    +E L+EAF+ FD + NGFI   EL+  + +  +KL      D+ + ++  + D++ DG+I+++EF  +M
Sbjct:  358 RIVADNLPNEEIAAIVQMFQTMDTDKNGHLTFEELRDGLKKIGQVVPDGDVKMLMDAADTDGNGMLSCDEFVTLSIH-LKRMGCDEHLQEAFKYFDKNGNGFIELDELKVALCD--DKLGHANGNDQWIKDIFFDVDLNKDGRISFDEFKAMM 507          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CANB2_RAT (Calcineurin subunit B type 2 OS=Rattus norvegicus GN=Ppp3r2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 52/152 (34.21%), Postives = 79/152 (51.97%), Query Frame = 2
Query:    5 KMADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +M      D+I     +F   D D  G ++  E  + +  L QNP    + D+    D DGNG +DF EF+   ++     D E++L+ AFR++D D +GFIS  EL  V+      NL +    + VD+ I   D DGDG+I++EEF  V+
Sbjct:   10 EMGTHFDHDEIKRLGRSFKKMDLDKSGSLSVDEFMS-LPELQQNPLVGRVIDIF---DTDGNGEVDFREFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLVDKSILVLDKDGDGRISFEEFRDVV 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLR_DROME (Myosin regulatory light chain 2 OS=Drosophila melanogaster GN=Mlc2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.419e-15
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 2
Query:   32 QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            QI+EFKEAF L D D DG I   +L     S+G+   + EL  M+ EA    +G I+F + L L A +M  +   D +E +  AF+ FD D  G I   + R ++ N G+K T +EVD+   +  +D   QI+    ++++  K
Sbjct:   76 QIAEFKEAFQLMDADKDGIIGKNDLRAAFDSVGKIANDKELDAMLGEA----SGPINFTQLLTLFANRMATSGANDEDEVVIAAFKTFDND--GLIDGDKFREMLMNFGDKFTMKEVDDAYDQMVIDDKNQIDTAALIEMLTGK 213          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML25_ORYSJ (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica GN=CML25 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.419e-15
Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = 2
Query:   38 SEFKEAFTLFDKDGDGCITTKEL-GTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEE---LKEAFRVF-DTDQNGFISTAELRHVMTNLG---EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 448
            S     F  FDKDGDG ++  EL G +  +LG+  +E E   ++  AD DG+G +D  EF+ L A       +EE    L+EAF ++ + ++   I+ A LR ++  LG   ++L  EE   MI   D++GDG ++++EF +VMM
Sbjct:    3 SSASSVFAAFDKDGDGKVSASELRGCMAAALGEEVSEEEAAAILATADTDGDGLLDHHEFMRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEECRAMICRFDLNGDGVLSFDEF-RVMM 146          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
MLE_DICDI4.877e-1632.14Myosin, essential light chain OS=Dictyostelium dis... [more]
CANB_YARLI4.877e-1633.80Calcineurin subunit B OS=Yarrowia lipolytica GN=CN... [more]
CANB_KLULA4.877e-1632.69Calcineurin subunit B OS=Kluyveromyces lactis GN=C... [more]
CANB1_NAEGR4.877e-1634.25Calcineurin subunit B OS=Naegleria gruberi GN=CNB1... [more]
CML34_ARATH6.369e-1635.07Probable calcium-binding protein CML34 OS=Arabidop... [more]
CANB_CANGA6.369e-1633.57Calcineurin subunit B OS=Candida glabrata GN=CNB1 ... [more]
CDPKO_ARATH8.318e-1630.72Calcium-dependent protein kinase 24 OS=Arabidopsis... [more]
CANB2_RAT1.086e-1534.21Calcineurin subunit B type 2 OS=Rattus norvegicus ... [more]
MLR_DROME1.419e-1534.72Myosin regulatory light chain 2 OS=Drosophila mela... [more]
CML25_ORYSJ1.419e-1535.86Probable calcium-binding protein CML25/26 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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