CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CDPK2_PLAFK (Calcium-dependent protein kinase 2 OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CPK2 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 41/151 (27.15%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    8 MADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVM--TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            +A  L D +I+  +  F   D D  G ++++E+   ++ +G      ++  ++ + D++ +G I + +FL     K      E  L   F+ FD D NG IS  EL+ +    ++   L D+ +D +++E D++GDG+I++ EF+ +M  K
Sbjct:  363 IAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIP-FKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMSKK 512          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CAVP_BRAFL (Calcium vector protein OS=Branchiostoma floridae PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 46/147 (31.29%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   11 ADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDF-PEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            A  L  ++  E  + F +FD++ +      +   ++  LGQ  T+ E + ++ EA        +  PE   ++  K    D EEE+  AF+VFD + +G I   E + +M  +GE+ LTD EV+E ++EAD DG+G I+  EF+ ++
Sbjct:    6 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNLGPEEWLVLCSKWVRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 152          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CABP8_RAT (Calcium-binding protein 8 OS=Rattus norvegicus GN=Caln1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 39/125 (31.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   29 DQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDTDQNGFISTAELRHVMTN-LGEKLTDEEVDEMI 385
            +++ E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++   D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   36 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CABP8_MOUSE (Calcium-binding protein 8 OS=Mus musculus GN=Caln1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 39/125 (31.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   29 DQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDTDQNGFISTAELRHVMTN-LGEKLTDEEVDEMI 385
            +++ E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++   D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   36 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLRS_RAT (Myosin regulatory light chain 2, skeletal muscle isoform OS=Rattus norvegicus GN=Mylpf PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   32 QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            QI EFKEAFT+ D++ DG I  ++L     ++G+ N    EL  M+ EA    +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLRS_RABIT (Myosin regulatory light chain 2, skeletal muscle isoform type 2 OS=Oryctolagus cuniculus GN=MYLPF PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   32 QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            QI EFKEAFT+ D++ DG I  ++L     ++G+ N    EL  M+ EA    +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   27 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 161          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLRS_MOUSE (Myosin regulatory light chain 2, skeletal muscle isoform OS=Mus musculus GN=Mylpf PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   32 QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            QI EFKEAFT+ D++ DG I  ++L     ++G+ N    EL  M+ EA    +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLRS_HUMAN (Myosin regulatory light chain 2, skeletal muscle isoform OS=Homo sapiens GN=MYLPF PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   32 QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            QI EFKEAFT+ D++ DG I  ++L     ++G+ N    EL  M+ EA    +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 2
Query:   56 FTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT-------------------DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            F LFDK+GDG IT +EL   +  LG N   ++L+  +      GN  ++F +F +L  + + D+                   ++E +L EAF+VFD + +GFIS  EL+ V+  LG  E    E V++MI   D + DG++++ EF  +M
Sbjct:   34 FDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGLNFDDFSSL-HKTLDDSFFGGACGGGENEDDPSSAAENESDLAEAFKVFDENGDGFISARELQTVLKKLGLPEGGEMERVEKMIVSVDRNQDGRVDFFEFKNMM 183          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CAVP_BRALA (Calcium vector protein OS=Branchiostoma lanceolatum PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 47/148 (31.76%), Postives = 82/148 (55.41%), Query Frame = 2
Query:   11 ADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNG--TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            A  L  ++  E  + F +FD++ +      +   ++  LGQ  T+ E + ++ EA         I   E+L L ++ ++  D EEE+  AF+VFD + +G I   E + +M  +GE+ LTD EV+E ++EAD DG+G I+  EF+ ++
Sbjct:    6 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPEEWLTLCSKWVRQ-DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 152          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
CDPK2_PLAFK7.785e-1427.15Calcium-dependent protein kinase 2 OS=Plasmodium f... [more]
CAVP_BRAFL7.785e-1431.29Calcium vector protein OS=Branchiostoma floridae P... [more]
CABP8_RAT7.785e-1431.20Calcium-binding protein 8 OS=Rattus norvegicus GN=... [more]
CABP8_MOUSE7.785e-1431.20Calcium-binding protein 8 OS=Mus musculus GN=Caln1... [more]
MLRS_RAT1.017e-1332.37Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_RABIT1.017e-1332.37Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_MOUSE1.017e-1332.37Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_HUMAN1.017e-1332.37Myosin regulatory light chain 2, skeletal muscle i... [more]
CML42_ARATH1.017e-1333.11Calcium-binding protein CML42 OS=Arabidopsis thali... [more]
CAVP_BRALA1.017e-1331.76Calcium vector protein OS=Branchiostoma lanceolatu... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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