CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.328e-13
Identity = 43/141 (30.50%), Postives = 79/141 (56.03%), Query Frame = 2
Query:   26 DDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEE-ELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +D+  E +  F+  D + DG I+ +EL     +LG+  ++ E    +  +D DG+G +DF EF  L+  K+ D + ++ ELK AFR++  +    I+   L+ ++  LGE  T ++   MI   D++ DG ++++EF  +M
Sbjct:   38 EDKNRELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQLI--KVDDEEEKKMELKGAFRLYIAEGEDCITPRSLKMMLKKLGESRTTDDCRVMISAFDLNADGVLSFDEFALMM 176          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLR2_CAEEL (Myosin regulatory light chain 2 OS=Caenorhabditis elegans GN=mlc-2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   11 ADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            A Q     I EFKEAF + D++ DG I   +L  +  S+GQ   ++++  MI EA    +G I+F  FL L   ++  TD E  +  AF +FD    G I   +L  ++ N  GE L ++EV  M +       G+++Y+ F  ++
Sbjct:   18 AAQFDQKTIQEFKEAFGIMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEA----SGPINFTVFLTLFGERLTGTDPEATIVGAFAMFDKKDCGKIKEDDLIKILQNKRGEPLDEDEVKAMYKGKPPIEGGEVDYKAFAHLI 159          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 40/142 (28.17%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   26 DDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELK--EAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +++  + +  F   D + DG I+ +EL    ++LG+  ++ E +  +  +D DG+G +D  EF  L+    + T+ E++ K  EAFR++  D    I+   L+ ++  LGE  T ++   MI+  D++ DG ++++EF  +M
Sbjct:   17 EEKNRDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLGESRTTDDCKVMIQAFDLNADGVLSFDEFALMM 158          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLR1_CAEEL (Myosin regulatory light chain 1 OS=Caenorhabditis elegans GN=mlc-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   11 ADQLTDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            A Q     I EFKEAF + D++ DG I   +L  +  S+GQ   ++++  MI EA    +G I+F  FL L   ++  TD E  +  AF +FD    G I   +L  ++ N  GE L ++EV  M +       G+++Y+ F  ++
Sbjct:   18 AAQFDQKTIQEFKEAFGIMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEA----SGPINFTVFLTLFGERLTGTDPEATIIGAFAMFDKKDCGKIKEDDLIKILQNKRGEPLDEDEVKAMYKGKPPIEGGEVDYKAFAHLI 159          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: MLRT_RABIT (Myosin regulatory light chain 2, skeletal muscle isoform type 1 OS=Oryctolagus cuniculus PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.864e-13
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 2
Query:   32 QISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            QI EFKEAFT+ D++ DG I  ++L     ++G+ N    EL  M+ EA    +G I+F  FL +   K+K  D E+ +  AF+V D +  G I    L  ++    ++ + EE+  M      D  G ++Y+    V+
Sbjct:   27 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLITQCDRFSQEEIKNMWAAFSPDVGGNVDYKNICYVI 161          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML20_ORYSJ (Probable calcium-binding protein CML20 OS=Oryza sativa subsp. japonica GN=CML20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   41 EFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNL---GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 454
            E    F  FD DGDG I+  E+       G +  EAE  +M+  AD DG+G +   E      R + +    + L+ AF  +D D NG I+  ELR  +  L   G  LT E+  E++   D DGDG I+++EF K MM+K
Sbjct:   43 ELIRVFRCFDTDGDGLISAAEM---REFYGCSVDEAE--EMVAAADRDGDGFVSIEEL-----RAVMEGGGLDALRAAFDEYDEDGNGVITAEELRRALRRLNLDGMDLTAEQCAEIVAAVDSDGDGVISFDEF-KAMMSK 172          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML32_ORYSJ (Probable calcium-binding protein CML32 OS=Oryza sativa subsp. japonica GN=CML32 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 2
Query:   47 KEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDT-------------------DSEEELKEAFRVFDTDQNGFISTAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            +  F LFD++GDG IT  EL   + +LG       L   ++    +G   + F +F + + R + D                    D EEE++EAF+VFD D +GFIS +EL+ V+  LG  E  +   V EMI   D + DG++++ EF  +M
Sbjct:   36 RRVFDLFDRNGDGEITVDELAQALDALGLVADRDGLAATVSAYVPEGAAGLRFEDF-DALHRALGDALFGSLDGAAAAGEPGGGGGDEEEEMREAFKVFDVDGDGFISASELQEVLKKLGLPEAGSLATVREMICNVDRNSDGRVDFGEFKSMM 188          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML30_ORYSJ (Probable calcium-binding protein CML30 OS=Oryza sativa subsp. japonica GN=CML30 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 2
Query:   56 FTLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEADADGNGTIDFPEFLNLM-------------------------ARKMKDTDSEEE---LKEAFRVFDTDQNGFISTAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            F+ FD DGDG IT  EL   ++ LG    + AE   ++   DA+ +G ID  EF  L                          A   ++ ++EEE   L+EAF VFD +++G IS  EL  V+ +L     G +    E  +MIR  D DGDG +++EEF ++M
Sbjct:   68 FSTFDHDGDGFITAAELEESLKRLGIAVSSAAEAAALVARVDANSDGLIDIHEFRELYDSIPKRRKSHQQHPLPSTAAADEEAAAADEEYEAEEEERDLREAFDVFDGNKDGLISAEELGTVLESLGLRQHGGRPAVAECRDMIRLVDSDGDGMVSFEEFKRMM 231          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: FIMB_DICDI (Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMAR 232
            ++ +ISEFK +F  FD++GDG I+  EL  ++   G+  T  E++DMI E D DGNG+IDF EFL +M +
Sbjct:    5 SESEISEFKASFNQFDENGDGQISALELQKILTKCGEKVTGVEVRDMIKEVDTDGNGSIDFKEFLQVMQK 74          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CDPK1_PLAYO (Calcium-dependent protein kinase 1 OS=Plasmodium yoelii yoelii GN=CPK1 PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 53/163 (32.52%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKEL---GTVMRS----LGQ-NPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHV--------------MTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 445
            T ++  E  + F   DK+GDG +  KEL     V+R+    LG+    E E+ +++ E D D NG I++ EF+++   K +   SEE L+ AF +FDTD++G I+  EL +V              +T++ EK      ++++ EAD + D  I+++EFV +M
Sbjct:  369 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-QILFSEERLRRAFNLFDTDKSGKITKEELANVIIRGFYFFTYSLFGLTSVSEKTW----NDVLGEADQNKDNMIDFDEFVSMM 526          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
CML38_ARATH1.328e-1330.50Calcium-binding protein CML38 OS=Arabidopsis thali... [more]
MLR2_CAEEL1.734e-1332.19Myosin regulatory light chain 2 OS=Caenorhabditis ... [more]
CML39_ARATH1.734e-1328.17Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
MLR1_CAEEL2.265e-1332.19Myosin regulatory light chain 1 OS=Caenorhabditis ... [more]
MLRT_RABIT3.864e-1331.65Myosin regulatory light chain 2, skeletal muscle i... [more]
CML20_ORYSJ5.046e-1336.17Probable calcium-binding protein CML20 OS=Oryza sa... [more]
CML32_ORYSJ6.591e-1332.47Probable calcium-binding protein CML32 OS=Oryza sa... [more]
CML30_ORYSJ6.591e-1333.54Probable calcium-binding protein CML30 OS=Oryza sa... [more]
FIMB_DICDI8.608e-1347.14Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 S... [more]
CDPK1_PLAYO1.468e-1232.52Calcium-dependent protein kinase 1 OS=Plasmodium y... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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