CX293896

Overview
NameCX293896
Unique NameCX293896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig445 contig Ccv1_Contig445:80..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: EFH52_TRYCR (EF-hand protein 5 variant 2 OS=Trypanosoma cruzi PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 37/126 (29.37%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   89 ITTKELGTVMRSLGQNPTEAELQD---MINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKVMMAK 454
            I +K++  +M+++G + TE E  D   +I +++      + F +FL LM R++ DT ++E L+ AF  +D  + G+++  +   +   L E+ T EE++E++  A+VD  D +I+Y  FV  + ++
Sbjct:   80 IPSKDVYALMQNVGMHLTEEEFHDALRVIGQSEPQNADELSFSDFLLLMTREVDDTMADE-LRSAFFHYDKHKTGYVTRKQFTELFATLAERSTPEELEELLAVAEVDETDDKIDYNRFVNELTSR 204          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: EFCB2_HUMAN (EF-hand calcium-binding domain-containing protein 2 OS=Homo sapiens GN=EFCAB2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   41 EFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEA-DADGNGTIDFPEFLNLMARKMKDTD----SEEELKEAFRVFDTDQNGFISTAELRHVMT 340
            + KEAF +FD + +  +  +E+GT++RSLG  PTE EL D+I E  + +  G I F +FL +M   + +       E+ L  AF V D+ + GF++  EL   MT
Sbjct:  154 KIKEAFEVFDHESNNTVDVREIGTIIRSLGCCPTEGELHDLIAEVEEEEPTGYIRFEKFLPVMTEILLERKYRPIPEDVLLRAFEVLDSAKRGFLTKDELIKYMT 258          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 2
Query:   35 ISEFKEAFTLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDT--DQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 433
            IS   EAF  FD D DG +T  EL  ++ SLG +  E E++DM+  ADAD +G +   E L++M A ++        L+ A    ++    +G +   EL  +++ +G   + E+  E+I   D DGDG I+ EEF
Sbjct:   29 ISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMG-TASVEDCMEIIACMDGDGDGAISVEEF 163          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAYO (Calcium-dependent protein kinase 4 OS=Plasmodium yoelii yoelii GN=CPK4 PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKEL-----------GTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 433
            T D+  E  + F   DK+GDG +   EL           G     L     E E+  +++  D D NG I++ EFL  +A   K   S E L++AF++FD D +G IS  EL  +   LG+ ++ +    +++E D + DG+I+++EF
Sbjct:  374 TIDETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGDDTTDLDNAAIEVEVDQILSSIDLDQNGYIEYSEFLT-VAIDRKLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLGD-VSSDCWKTVLKEVDQNNDGEIDFKEF 518          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CDPK4_PLABA (Calcium-dependent protein kinase 4 OS=Plasmodium berghei (strain Anka) GN=CPK4 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKEL-----------GTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 433
            T D+  E  + F   DK+GDG +   EL           G     L     E E+  +++  D D NG I++ EFL  +A   K   S E L++AF++FD D +G IS  EL  +   LG+ ++ +    +++E D + DG+I+++EF
Sbjct:  374 TIDETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGDDTTDLDNAAIEVEVDQILSSIDLDQNGYIEYSEFLT-VAIDRKLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLGD-VSSDCWKTVLKEVDQNNDGEIDFKEF 518          
BLAST of CX293896 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAF7 (Calcium-dependent protein kinase 4 OS=Plasmodium falciparum (isolate 3D7) GN=CPK4 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 47/148 (31.76%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   23 TDDQISEFKEAFTLFDKDGDGCITTKEL-----------GTVMRSLGQNPTEAELQDMINEADADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDTDQNGFISTAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 433
            T D+  E  + F   DK+GDG +   EL           G     L     E E+  ++N  D D NG I++ EFL +   + K   S E L++AF++FD D +G IS  EL  +   L + ++ E    +++E D + DG+I+++EF
Sbjct:  374 TIDETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGEDTSDLDNAAIEYEVDQILNSIDLDQNGYIEYSEFLTVSIDR-KLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLSD-VSSECWKTVLKEVDQNNDGEIDFKEF 518          
The following BLAST results are available for this feature:
BLAST of CX293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 476
Match NameE-valueIdentityDescription
EFH52_TRYCR4.723e-1129.37EF-hand protein 5 variant 2 OS=Trypanosoma cruzi P... [more]
EFCB2_HUMAN4.723e-1137.14EF-hand calcium-binding domain-containing protein ... [more]
CML29_ORYSJ4.723e-1134.56Probable calcium-binding protein CML29 OS=Oryza sa... [more]
CDPK4_PLAYO6.169e-1131.76Calcium-dependent protein kinase 4 OS=Plasmodium y... [more]
CDPK4_PLABA6.169e-1131.76Calcium-dependent protein kinase 4 OS=Plasmodium b... [more]
CDPK4_PLAF78.057e-1131.76Calcium-dependent protein kinase 4 OS=Plasmodium f... [more]

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Properties
Property NameValue
Genbank descriptionC05002C04SK FlavRip1 Citrus clementina cDNA clone C05002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293896 ID=CX293896; Name=CX293896; organism=Citrus clementina; type=EST; length=526bp
AAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCACCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCTGA
GCTCCAGGACATGATCAATGAAGCGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCGAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACACGGATCAGAA
TGGTTTCATCTCAACTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCTCTTT
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