CX293906

Overview
NameCX293906
Unique NameCX293906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:71..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+L++R+ LKYA   RE   I+    VLVDG+V  ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N ++GR I
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNI 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 57/142 (40.14%), Postives = 88/142 (61.97%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI ++R+ L YA T RE   IL +  +LVDG+V  D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEAK K  ++ + +  +     +N ++G
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDG 145          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 57/142 (40.14%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDGKV  D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N ++G
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG 145          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   46 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +KHLKR  +P HW +      +  KPS GPH     LPL++++R+ LK A   RE   I+    VLVDG+   +  +P GFMDVVSIP+T + +R+L D +GR  LH + +E A FKLCK+ +    + G   +N ++GR
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGR 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            G +KHLKR  APK W + K    +  K S+GPH   E +PL++VLR+ L  A   RE   IL    VLVDG    +  +P GFMDV+SIPK N+ FR+L D KGR  L  + ++++ FKL K+      + G   +N   GR I
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI 148          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24
Identity = 56/142 (39.44%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+V  D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N ++G
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG 145          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG    +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N ++GR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGR 144          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 55/142 (38.73%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+V  D  +P G MDVVSIP+T E++R+L +  G+  LH + ++EA  K  ++R+ +  +     +N ++G
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG 145          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG    +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N ++GR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGR 144          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG    +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N ++GR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGR 144          
The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RS4E_METJA1.623e-2542.7630S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_PYRKO3.615e-2540.1430S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRHO4.722e-2540.1430S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_METTH4.722e-2541.4330S ribosomal protein S4e OS=Methanobacterium ther... [more]
RS4E_METST4.722e-2542.3630S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_PYRAB1.794e-2439.4430S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METM53.060e-2441.2630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_PYRFU8.904e-2438.7330S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METM78.904e-2440.5630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM68.904e-2440.5630S ribosomal protein S4e OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05002D03SK FlavRip1 Citrus clementina cDNA clone C05002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bp
CAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAA
GCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTG
GTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAA
TGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCAC
ATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATG
GGAAGGTTATGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTG
TCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGG
TCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTT
GCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAAC
ACCTATAATGGGCGTACCATCCGCTACCCTGACCCACT
back to top