CX293906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 +G K+HLKRL AP W L + F +P G H E LPL+L++R+ LKYA RE I+ VLVDG+V ++ P G MDVVS+P NEN+R+L+D KGR +L E KLCK+++ + G +N ++GR I Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNI 146
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25 Identity = 57/142 (40.14%), Postives = 88/142 (61.97%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462 +G K+HLKRL AP W + + +A +PS GPH + +PLI ++R+ L YA T RE IL + +LVDG+V D +P G MDVVSIP+T E++R+L + G+ LH + +EEAK K ++ + + + +N ++G Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDG 145
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 57/142 (40.14%), Postives = 87/142 (61.27%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462 +G K+HLKRL AP W +++ +A +P GPH R +PL+ ++R+ L YA T RE IL + LVDGKV D +P G MDVVSIP+T E++R+L + G+ LH + +EEA K ++R+ + + +N ++G Sbjct: 4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG 145
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1 Query: 46 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465 +KHLKR +P HW + + KPS GPH LPL++++R+ LK A RE I+ VLVDG+ + +P GFMDVVSIP+T + +R+L D +GR LH + +E A FKLCK+ + + G +N ++GR Sbjct: 7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGR 146
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 G +KHLKR APK W + K + K S+GPH E +PL++VLR+ L A RE IL VLVDG + +P GFMDV+SIPK N+ FR+L D KGR L + ++++ FKL K+ + G +N GR I Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI 148
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.794e-24 Identity = 56/142 (39.44%), Postives = 87/142 (61.27%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462 +G K+HLKRL AP W +++ +A +P GPH R +PL+ ++R+ L YA T RE IL + LVDG+V D +P G MDVVSIP+T E++R+L + G+ LH + +EEA K ++R+ + + +N ++G Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG 145
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24 Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG + +PAG MDV+SIP+ +EN+ +L+D GR L + ++A KLCK+ + + G +N ++GR Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGR 144
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 55/142 (38.73%), Postives = 87/142 (61.27%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNG 462 +G K+HLKRL AP W +++ +A +P GPH R +PL+ ++R+ L YA T RE IL + LVDG+V D +P G MDVVSIP+T E++R+L + G+ LH + ++EA K ++R+ + + +N ++G Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG 145
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG + +PAG MDV+SIP+ +EN+ +L+D GR L + ++ KLCK+ + + G +N ++GR Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGR 144
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 58/143 (40.56%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG + +PAG MDV+SIP+ +EN+ +L+D GR L + ++ KLCK+ + + G +N ++GR Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGR 144 The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bpback to top |