CX293906

Overview
NameCX293906
Unique NameCX293906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:71..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.519e-23
Identity = 61/155 (39.35%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   31 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT--IRYPDP 486
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +DG+V  +  YP GFMDV+ I  T E +R+L      F LH +  EEA+FKL ++      + G   ++ ++GR   IR  DP
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDP 155          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            G +KHLK   APK W +      +  KPS+G H     L L LV+R+ LK A   RE   I+   +VLVDG+V+ D  +P GFMD++ IPKT E +R+L D KGR +L+ +  EE   KLCK+ +    + G   +N ++G+ +
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNV 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG    +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N ++GR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGR 144          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG    +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N ++GR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGR 144          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   37 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG    +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N ++GR
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGR 144          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   31 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT--IRYPDP 486
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++++R+ L YA T RE   ++ + H  VDG+V  +  YP G MDV+ I  T E +R++        L  +  EEAK+KL ++ +    + G   +N ++GR   I+  DP
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDP 155          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 1
Query:   40 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT--IRYPDP 486
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VDG V  +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  ++G+   +   DP
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDP 158          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   31 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI--RYPDP 486
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+L++RN L YA T RE   ++ + H  VDG V  D  +P GFMDV+ +  T E FR+L      F+LH + +EE   K  ++ +    + G   +N ++GR I  R  DP
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDP 155          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.681e-20
Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VDGKV  D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N ++GR I
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNI 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-19
Identity = 58/157 (36.94%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   31 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT--IRYPDP 486
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VDG+V  D  +P G MDV+ I   +E +R++ Y  K    +  +  EEAK K+C++ +    + G   +N ++GR   IR  DP
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDP 156          
The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RS4E_HYPBU1.519e-2339.3530S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_METS32.591e-2340.2830S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_METVS4.419e-2339.1630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA4.419e-2339.1630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METMP7.538e-2339.1630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_STAMF8.334e-2238.7130S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METKA8.334e-2234.8730S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_AERPE1.422e-2138.0630S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_CALMQ2.681e-2035.0030S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_IGNH41.019e-1936.9430S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionC05002D03SK FlavRip1 Citrus clementina cDNA clone C05002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bp
CAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAA
GCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTG
GTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAA
TGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCAC
ATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATG
GGAAGGTTATGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTG
TCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGG
TCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTT
GCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAAC
ACCTATAATGGGCGTACCATCCGCTACCCTGACCCACT
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