CX293906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.738e-19 Identity = 53/142 (37.32%), Postives = 80/142 (56.34%), Query Frame = 1 Query: 40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465 G +HLK L AP ++ + K + KPS GPH E +PL+L++R+ LK A T RE I+ + +LVDGK D + G MDV+SIP+ N+R++ D RL + E+K KL KV + + G + +++GR Sbjct: 5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGR 146
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19 Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 1 Query: 43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 ++ H KRL+APK + + + + KPS GPH ++E +PL++++R+ L+ A T RE I+ +LVDG V D +P G DVV+IPK +++R+L+D KGR+ + E+A KL K+ + + G +N ++G I Sbjct: 2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNI 141
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19 Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYP 480 HL+R +P W + K GG +A +PS GPH +PL LV+R+ L+YA T RE I+ + ++ VDG V + +P G MDVV I T E +R++ D + + L + EEA KL +V + G ++ ++GR + P Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMP 146
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19 Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 HLKR+ AP+ W + + + KP G H +PL++VLR+ LK A E+ IL + VLVDGKV D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N ++G T+ Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTM 142
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19 Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 HL+R AP W + K+GG + + S GPH LPL +++R+ LKYA T RE I+ + +V +DG + D +P G MDVV I T E +R++ D K + L + EEA KL +V + G ++ ++GR + Sbjct: 3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNL 143
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19 Identity = 50/151 (33.11%), Postives = 83/151 (54.97%), Query Frame = 1 Query: 40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT--IRYPDP 486 G +HLK +NAP++W + + + K S GPH LPL++++R+ L YA T +E ++ + + +DG+V D +P G MDV+ I N+ +R++ L + EEA FKLC++ + + G +N ++GR IR DP Sbjct: 5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDP 155
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18 Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 H+ R AP M+ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKV D YP G MD+VSIP + FR+L D R + +EA++K ++ + ++G +N +GR I Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNI 142
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18 Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 H KRL+ PK W + K G + GPH LPL +++R+ LK RE IL + VLVDG D +P G DV+++P NE +R+L D KGR LH L + KLC++ + + G +N +G I Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNI 141
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18 Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 HL+R AP W + K GG + +PS GPH LPL L++R+ LKYA T E I+ + +V VDG V D +P G MDV+ I T E +R++ D + L + EEA KL +V + G ++ ++GR + Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNL 143
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18 Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 H+ R P ++ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKV D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N +GR I Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNI 142 The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bpback to top |