CX293906

Overview
NameCX293906
Unique NameCX293906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:71..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.738e-19
Identity = 53/142 (37.32%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGR 465
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+L++R+ LK A T RE   I+  + +LVDGK   D  +  G MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + +++GR
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGR 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.270e-19
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 1
Query:   43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVDG V  D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N ++G  I
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNI 141          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYP 480
            HL+R  +P  W +  K GG +A +PS GPH     +PL LV+R+ L+YA T RE   I+ + ++ VDG V  +  +P G MDVV I  T E +R++ D +  + L  +  EEA  KL +V      + G   ++ ++GR +  P
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMP 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            HLKR+ AP+ W + +    +  KP  G H     +PL++VLR+ LK A    E+  IL +  VLVDGKV  D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N ++G T+
Sbjct:    5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTM 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 51/141 (36.17%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            HL+R  AP  W +  K+GG +  + S GPH     LPL +++R+ LKYA T RE   I+ + +V +DG +  D  +P G MDVV I  T E +R++ D K  + L  +  EEA  KL +V      + G   ++ ++GR +
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNL 143          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 50/151 (33.11%), Postives = 83/151 (54.97%), Query Frame = 1
Query:   40 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT--IRYPDP 486
            G  +HLK +NAP++W + +    +  K S GPH     LPL++++R+ L YA T +E   ++ + +  +DG+V  D  +P G MDV+ I   N+ +R++        L  +  EEA FKLC++ +    + G   +N ++GR   IR  DP
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDP 155          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            H+ R  AP   M+ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKV  D  YP G MD+VSIP  +  FR+L D     R   +  +EA++K  ++ +    ++G   +N  +GR I
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNI 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 51/140 (36.43%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            H KRL+ PK W + K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG    D  +P G  DV+++P  NE +R+L D KGR  LH L +     KLC++ +    + G   +N  +G  I
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNI 141          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            HL+R  AP  W +  K GG +  +PS GPH     LPL L++R+ LKYA T  E   I+ + +V VDG V  D  +P G MDV+ I  T E +R++ D    + L  +  EEA  KL +V      + G   ++ ++GR +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNL 143          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKV  D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  +GR I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNI 142          
The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RS4E_KORCO1.738e-1937.3230S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_ARCFU2.270e-1936.3630S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_THENV2.964e-1936.1130S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_UNCMA8.625e-1936.4330S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_PYRIL8.625e-1936.1730S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_DESK18.625e-1933.1130S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_SULSO1.126e-1836.4330S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_METAC1.126e-1836.4330S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_PYRAE1.921e-1836.8830S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_SULIY9.536e-1835.0030S ribosomal protein S4e OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC05002D03SK FlavRip1 Citrus clementina cDNA clone C05002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bp
CAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAA
GCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTG
GTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAA
TGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCAC
ATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATG
GGAAGGTTATGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTG
TCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGG
TCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTT
GCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAAC
ACCTATAATGGGCGTACCATCCGCTACCCTGACCCACT
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