CX293906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16 Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYP 480 H+ R AP L K + + + GPHK E +PL L+L++ L A T RE ++++ ++VDG+V D +P G MDV+SIP ++ FR++ D + E+AK+K ++ + + G +N +GR I P Sbjct: 3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIP 145
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15 Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 H+ R AP + K + + +GPHK +E +PL ++L+ LK T RE I+ VLVDGKV D YP G MDVV IP + R++ D ++ E+AK+K ++ + + G+ +N +GR I Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNI 142
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14 Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 H+ RL AP K + + S GPH + +PL L+LR+ L + + +E I+ VLVDG+V D YP G MDV++IP + R++ D + + +EE+KFKL ++ + + G+ N +GR + Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNL 142
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14 Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+G+ + G D+VSIPK+ +++R+L D KGR + ++ A +L K+ + + G +N +G + Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV 142
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14 Identity = 43/147 (29.25%), Postives = 77/147 (52.38%), Query Frame = 1 Query: 43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPD 483 + H KRL PK W +++ A+ K ++GPH E +PL++VLR+ L Y + +E L Q +L++G ++D+ P G D+++ + E +R+ D GR L + ++ A KL K+ G ++ ++G T+ D Sbjct: 1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVED 146
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14 Identity = 42/147 (28.57%), Postives = 76/147 (51.70%), Query Frame = 1 Query: 43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPD 483 + H KRL+ P W +++ F K +GPH +PL++VLR+ L YA +E L + +VL++GK ++D+ P G D+++ + E +R+ GR L ++ + A+ KL K+ + G + ++G T+ D Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVED 146
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13 Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 1 Query: 43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+G ++D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + ++G + Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNV 142
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13 Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKV 408 MA+G+KKH KR+++ K G F K SSGPH + + L+ +++ A +E ++ + V+GK +P MD +S P N+++R+L G+ ++ + E K+CKV Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKV 126
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12 Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 1 Query: 58 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT 468 KRL + + + + P P+ G H + + L+ ++R+ LK + RE IL V VDGK + +K + GFMDV+ I E++R++Y+ +G L E A KL KVRS + T++GRT Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12 Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471 + H KRL+ PK W +++ F K +GPH +PL++VLR+ L+Y E + VLV+G + D P G D+++ P +E +R+ D GR L + + A KL KV G +N ++G + Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNL 142 The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bpback to top |