CX293906

Overview
NameCX293906
Unique NameCX293906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:71..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYP 480
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VDG+V  D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  +GR I  P
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIP 145          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            H+ R  AP    + K    +  +  +GPHK +E +PL ++L+  LK   T RE   I+    VLVDGKV  D  YP G MDVV IP  +   R++ D        ++  E+AK+K  ++ +    + G+  +N  +GR I
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNI 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVDG+V  D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  +GR +
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNL 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   52 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+ +       G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  +G  +
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 43/147 (29.25%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPD 483
            +  H KRL  PK W +++   A+  K ++GPH   E +PL++VLR+ L Y  + +E    L Q  +L++G  ++D+  P G  D+++  +  E +R+  D  GR  L  + ++ A  KL K+        G   ++ ++G T+   D
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVED 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 42/147 (28.57%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPD 483
            +  H KRL+ P  W +++    F  K  +GPH     +PL++VLR+ L YA   +E    L + +VL++GK ++D+  P G  D+++  +  E +R+     GR  L ++  + A+ KL K+ +      G   +  ++G T+   D
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVED 146          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G  ++D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  ++G  +
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNV 142          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKV 408
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ +++     A   +E   ++    + V+GK      +P   MD +S P  N+++R+L    G+  ++ +   E   K+CKV
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKV 126          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   58 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRT 468
            KRL   +   + +    + P P+ G H   + + L+ ++R+ LK +   RE   IL    V VDGK + +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T++GRT
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140          
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   43 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTI 471
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G  + D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N ++G  +
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNL 142          
The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RS4E_SULTO5.232e-1632.1730S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_SULAC1.522e-1533.5730S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_METS51.683e-1432.1430S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_METHJ2.198e-1428.5730S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_NATPD3.750e-1429.2530S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALMA8.354e-1428.5730S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_HALLT1.861e-1329.3730S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4_BIGNA9.236e-1329.3740S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_THEAC2.058e-1232.1230S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_HALSA4.584e-1230.0730S ribosomal protein S4e OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionC05002D03SK FlavRip1 Citrus clementina cDNA clone C05002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bp
CAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAA
GCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTG
GTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAA
TGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCAC
ATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATG
GGAAGGTTATGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTG
TCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGG
TCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTT
GCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAAC
ACCTATAATGGGCGTACCATCCGCTACCCTGACCCACT
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