CX293920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.462e-46 Identity = 85/149 (57.05%), Postives = 117/149 (78.52%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA AGADL G ++LIEQI G MEFD+LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ +AI+EFK GK+E+RAD++GIVH+ FGK FS +DLLIN A + I+ N+P GAKG YW++ ++ ++MGPSI +++ + D KL Sbjct: 86 EALAAGADLAGSEELIEQISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNRPSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKL 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.462e-46 Identity = 83/145 (57.24%), Postives = 116/145 (80.00%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437 EA NAGAD+ G ++LI++I G ++FDKLIA+PD+M +A LG++LGPRGLMP+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N SI+ NKP G+KG YWK+ ++ S+MGPSI+++I +L Sbjct: 85 EAMNAGADISGSEELIDEISKGRLDFDKLIATPDIMPLIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSIDKNKPSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 4.522e-46 Identity = 82/145 (56.55%), Postives = 118/145 (81.38%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437 EA +AGAD+ G ++LI++I G ++FDKLIA+PD+M +A LG++LGPRGLMP+PKAGTVT ++ +A+ EFK GKVEYR D+TGI+H+PFGK+ FS++DL++N +SI+ NKP GAKG YWK+ ++ S+MGPSI+++I +L Sbjct: 85 EAISAGADVSGSEELIDEILKGRLDFDKLIATPDVMPLIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGKYWKTFFLSSTMGPSIQIDITSLL 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 5.906e-46 Identity = 88/146 (60.27%), Postives = 112/146 (76.71%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EAK AGA+L G +DL+E I G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT ++ AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + D Sbjct: 85 EAKAAGAELAGDEDLVETIAKGEMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.316e-45 Identity = 87/149 (58.39%), Postives = 117/149 (78.52%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA+NAGAD VG +DLIE+I G ++FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRADKTGIVH+ FGK F + LL N A +SI+ N+P GAKG YW++ ++C++MGPSI ++I + + KL Sbjct: 86 EAQNAGADRVGFEDLIEEIGKGVIDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.244e-45 Identity = 86/149 (57.72%), Postives = 116/149 (77.85%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA+ AGAD+ G ++LIE+I+GGFMEFD +IA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVHIPFGK F+ + L+ N + +I+ KP GAKG YW++ +I S+MGPSI ++I + D KL Sbjct: 86 EAEKAGADIAGSEELIERIQGGFMEFDLMIATPDIMPQVARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAGKLEFRADRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAKGRYWRTFHIKSTMGPSIEIDINALRDLKL 234
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.244e-45 Identity = 81/142 (57.04%), Postives = 112/142 (78.87%), Query Frame = 3 Query: 9 KNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 KN G D+VG DL+E I GF+EFD+L+ +PDMM +A +GKILGPRGLMP+PK+G+VT++I AI+EFKKGK+EYR DK+GIVH GK DF+ +DLL N +A KSI+ N+P GAKG YWK+ Y+C++M P+I+++ ++ Sbjct: 89 KNFGVDIVGSKDLVESIANGFLEFDQLLTTPDMMPVIAKVGKILGPRGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIKKSIDQNRPNGAKGKYWKNMYLCTTMSPAIKIDFNKL 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 2.931e-45 Identity = 86/143 (60.14%), Postives = 110/143 (76.92%), Query Frame = 3 Query: 6 AKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 AK AGA+L G +DL+E I G M FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI++FK GK+E+RAD+TGIVH+ FGKA F+ D LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + Sbjct: 86 AKAAGAELAGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGIVHVRFGKASFTADALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSAL 228
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 2.931e-45 Identity = 86/152 (56.58%), Postives = 116/152 (76.32%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 458 EA AGADLVG ++LI++I+ G ++FD LIA+PDMM +VA LG++LGPRGLMP+PK GTVT ++ QAI +FK GK+E+R D+TGIVH+ FGKA+FSE+ LL N A ++++ N+P G KG YWKS YI S+M PSI ++ + D KL N Sbjct: 85 EASTAGADLVGAEELIDEIQNGRLDFDCLIATPDMMPQVAKLGRVLGPRGLMPSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGIVHVLFGKANFSEEALLGNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEVDYNLLRDLKLTEN 236
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 5.000e-45 Identity = 86/149 (57.72%), Postives = 116/149 (77.85%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449 EA+NAGAD VG +DLIE+I G M+FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRAD+TGIVH+ FGK F + LL N A +SI+ N+P GAKG YW++ ++ ++MGPSI ++I + + KL Sbjct: 86 EAQNAGADRVGYEDLIEEISKGMMDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPSGAKGKYWRTLHVSATMGPSIEVDINALRELKL 234 The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bpback to top |