CX293920

Overview
NameCX293920
Unique NameCX293920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.462e-46
Identity = 85/149 (57.05%), Postives = 117/149 (78.52%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA  AGADL G ++LIEQI  G MEFD+LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ +AI+EFK GK+E+RAD++GIVH+ FGK  FS +DLLIN  A  + I+ N+P GAKG YW++ ++ ++MGPSI +++  + D KL
Sbjct:   86 EALAAGADLAGSEELIEQISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNRPSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKL 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.462e-46
Identity = 83/145 (57.24%), Postives = 116/145 (80.00%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437
            EA NAGAD+ G ++LI++I  G ++FDKLIA+PD+M  +A LG++LGPRGLMP+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N      SI+ NKP G+KG YWK+ ++ S+MGPSI+++I  +L
Sbjct:   85 EAMNAGADISGSEELIDEISKGRLDFDKLIATPDIMPLIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSIDKNKPSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.522e-46
Identity = 82/145 (56.55%), Postives = 118/145 (81.38%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437
            EA +AGAD+ G ++LI++I  G ++FDKLIA+PD+M  +A LG++LGPRGLMP+PKAGTVT ++ +A+ EFK GKVEYR D+TGI+H+PFGK+ FS++DL++N     +SI+ NKP GAKG YWK+ ++ S+MGPSI+++I  +L
Sbjct:   85 EAISAGADVSGSEELIDEILKGRLDFDKLIATPDVMPLIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGKYWKTFFLSSTMGPSIQIDITSLL 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.906e-46
Identity = 88/146 (60.27%), Postives = 112/146 (76.71%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EAK AGA+L G +DL+E I  G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT ++  AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   + D
Sbjct:   85 EAKAAGAELAGDEDLVETIAKGEMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.316e-45
Identity = 87/149 (58.39%), Postives = 117/149 (78.52%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA+NAGAD VG +DLIE+I  G ++FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRADKTGIVH+ FGK  F  + LL N  A  +SI+ N+P GAKG YW++ ++C++MGPSI ++I  + + KL
Sbjct:   86 EAQNAGADRVGFEDLIEEIGKGVIDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.244e-45
Identity = 86/149 (57.72%), Postives = 116/149 (77.85%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA+ AGAD+ G ++LIE+I+GGFMEFD +IA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVHIPFGK  F+ + L+ N  +   +I+  KP GAKG YW++ +I S+MGPSI ++I  + D KL
Sbjct:   86 EAEKAGADIAGSEELIERIQGGFMEFDLMIATPDIMPQVARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAGKLEFRADRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAKGRYWRTFHIKSTMGPSIEIDINALRDLKL 234          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.244e-45
Identity = 81/142 (57.04%), Postives = 112/142 (78.87%), Query Frame = 3
Query:    9 KNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            KN G D+VG  DL+E I  GF+EFD+L+ +PDMM  +A +GKILGPRGLMP+PK+G+VT++I  AI+EFKKGK+EYR DK+GIVH   GK DF+ +DLL N +A  KSI+ N+P GAKG YWK+ Y+C++M P+I+++  ++
Sbjct:   89 KNFGVDIVGSKDLVESIANGFLEFDQLLTTPDMMPVIAKVGKILGPRGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIKKSIDQNRPNGAKGKYWKNMYLCTTMSPAIKIDFNKL 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.931e-45
Identity = 86/143 (60.14%), Postives = 110/143 (76.92%), Query Frame = 3
Query:    6 AKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            AK AGA+L G +DL+E I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++  AI++FK GK+E+RAD+TGIVH+ FGKA F+ D LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   +
Sbjct:   86 AKAAGAELAGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGIVHVRFGKASFTADALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSAL 228          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.931e-45
Identity = 86/152 (56.58%), Postives = 116/152 (76.32%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 458
            EA  AGADLVG ++LI++I+ G ++FD LIA+PDMM +VA LG++LGPRGLMP+PK GTVT ++ QAI +FK GK+E+R D+TGIVH+ FGKA+FSE+ LL N  A  ++++ N+P G KG YWKS YI S+M PSI ++   + D KL  N
Sbjct:   85 EASTAGADLVGAEELIDEIQNGRLDFDCLIATPDMMPQVAKLGRVLGPRGLMPSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGIVHVLFGKANFSEEALLGNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEVDYNLLRDLKLTEN 236          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.000e-45
Identity = 86/149 (57.72%), Postives = 116/149 (77.85%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 449
            EA+NAGAD VG +DLIE+I  G M+FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRAD+TGIVH+ FGK  F  + LL N  A  +SI+ N+P GAKG YW++ ++ ++MGPSI ++I  + + KL
Sbjct:   86 EAQNAGADRVGYEDLIEEISKGMMDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPSGAKGKYWRTLHVSATMGPSIEVDINALRELKL 234          
The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_TRIEI3.462e-4657.0550S ribosomal protein L1 OS=Trichodesmium erythrae... [more]
RK1_PORPU3.462e-4657.2450S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RK1_PORYE4.522e-4656.5550S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_SYNPX5.906e-4660.2750S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNJA1.316e-4558.3950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_GLOVI2.244e-4557.7250S ribosomal protein L1 OS=Gloeobacter violaceus ... [more]
RK1_CYACA2.244e-4557.0450S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_SYNS92.931e-4560.1450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_CYAPA2.931e-4556.5850S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]
RL1_SYNJB5.000e-4557.7250S ribosomal protein L1 OS=Synechococcus sp. GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC05002E08SK FlavRip1 Citrus clementina cDNA clone C05002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bp
ATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATT
GAACAAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACC
AGATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGG
GACTCATGCCAAATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAG
GCCATAGAAGAATTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAAC
TGGGATTGTCCACATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACC
TCCTCATAAACTTCCTTGCTGCTATTAAATCAATTGAAGCAAACAAGCCA
AAAGGGGCCAAAGGAGTGTACTGGAAAAGTGCTTACATTTGCTCATCAAT
GGGACCTTCCATTCGATTAAACATAAAAGAAATGCTCGATTACAAGCTTC
CATCAAATTTCTAAACGACATAACTAAATTTTGTAAATGATATCTTTAAC
TGTTCAGTCAGCCTCTTTGATACCCATGC
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