CX293920

Overview
NameCX293920
Unique NameCX293920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_THAPS (50S ribosomal protein L1, chloroplastic OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.530e-45
Identity = 80/141 (56.74%), Postives = 112/141 (79.43%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 425
            EA   GAD+VG  +LI+ I  G + FD L+A+PDMM K+A LG++LGP+GLMP+PK+GTV+TN+ + + +FKKGK EY+ADKTG+VH+ FGKA+FS+D L+ N  +  +SIE N+P G KG Y+KS +IC+SMGPSI+L++
Sbjct:   86 EANEGGADIVGSQELIDDISQGNLNFDLLVATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTNLTETLSDFKKGKFEYKADKTGVVHVNFGKANFSKDQLMENLTSLYQSIEQNRPSGVKGKYFKSLFICTSMGPSIQLDL 226          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.528e-45
Identity = 83/145 (57.24%), Postives = 111/145 (76.55%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437
            EA+ AGAD VG DDLIE+I  G + FD LIA+PDMM K+A LG++LGP+GLMP+PK+GTV+T +   + EFKKGK EY+ADK G+VH+ FGK++F+   L+ N  A  KSIE N+P G KG Y+KS +IC++MGPSI+L++   L
Sbjct:   86 EAREAGADRVGSDDLIEEISQGNISFDLLIATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTTLTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKYFKSLFICTTMGPSIQLDLNIFL 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.528e-45
Identity = 85/138 (61.59%), Postives = 107/138 (77.54%), Query Frame = 3
Query:   18 GADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 431
            GADLVG DDL  QI    + FD LIA+PDMM  +A LGKILGPRGLMP+PK+GTVTTN+ +AI+ F++G++EYR DKTGIVH+ FG+ DF+E  L  N +A  +S+E NKP GA G+YWKS  I +SM PSIRLNI++
Sbjct:   85 GADLVGSDDLCAQIAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMPSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGIVHLAFGRMDFNEQHLYDNLVAIKESVETNKPSGASGLYWKSFAIATSMSPSIRLNIQQ 222          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.455e-44
Identity = 86/146 (58.90%), Postives = 111/146 (76.03%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EAK+AGADL G ++L++ I  G M FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVT ++  AI+EFK GK+E+RADK GI+H+ FGKA F+ D LL N     ++I+ NKP GAKG +WK+ YI S+MGPSI ++I  + D
Sbjct:   85 EAKSAGADLAGEEELVDSISKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRADKAGIIHVRFGKASFNADALLENLKTLQETIDRNKPSGAKGRFWKTLYITSTMGPSIEVDIAALQD 230          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.233e-44
Identity = 83/145 (57.24%), Postives = 113/145 (77.93%), Query Frame = 3
Query:    6 AKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            A+ +GADLVG ++LIE I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++  AI  FK GK E+RAD+ GIVH+ FGK+ F+ +DLL+N  A  ++I+ N+P GAKG YW+S Y+ +SMGPSI+++I  + D
Sbjct:   87 AEESGADLVGSEELIEDIQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMPSPKGGTVTTDVATAIAAFKAGKQEFRADRAGIVHVLFGKSSFAAEDLLVNLKALQETIDRNRPSGAKGRYWRSIYVSASMGPSIQVDINALRD 231          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.608e-43
Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EA+ AGAD+VG +DL E+I+GGFM+FDKLIA+PDMM  V  LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  D L  NF A ++ I   KP+ AKGVY K+  + ++MGP I++++ E+
Sbjct:   86 EAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.608e-43
Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EA+ AGAD+VG +DL E+I+GGFM+FDKLIA+PDMM  V  LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  D L  NF A ++ I   KP+ AKGVY K+  + ++MGP I++++ E+
Sbjct:   86 EAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.101e-43
Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EA+ AGAD+VG +DL E+I+GGFM+FDKLIA+PDMM  V  LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  + L  NF A ++ I   KP+ AKGVY K+  + ++MGP I+L++ E+
Sbjct:   86 EAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPEKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLAEL 229          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.982e-43
Identity = 79/142 (55.63%), Postives = 112/142 (78.87%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 428
            EAK++G D+VG D+LI QI  G + FD LIA+P+MM K+A LG++LGP+GLMP+PK+GTVT+ +   + EFKKGK EY+ADKTGIVH+ FGK++F+ + L+ N  A  +SIE N+P G KG Y+KS  IC++MGPS++L+++
Sbjct:   86 EAKSSGGDIVGNDELIAQITQGQINFDLLIATPNMMPKLAKLGRMLGPKGLMPSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGIVHVNFGKSNFTNEQLVENLKALYQSIEQNRPSGVKGKYFKSVSICTTMGPSVKLDLE 227          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANADF (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.362e-42
Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EA+ AGAD+VG +DL E+++GGFM+FDK++A+PDMM  V  LGK+LGPRGLMPNPK GTV+ +I +A++E K GKVE+R +K GIVH+PFGKA F  + L  NF A ++ I   KP+ AKGVY K+  + ++MGP I+L++ E+
Sbjct:   86 EAQEAGADIVGAEDLAEKVQGGFMDFDKVLATPDMMGVVGRLGKVLGPRGLMPNPKVGTVSADIARAVKEQKAGKVEFRVEKAGIVHVPFGKASFEPEKLKANFSAIMEIIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLSEL 229          
The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_THAPS6.530e-4556.7450S ribosomal protein L1, chloroplastic OS=Thalass... [more]
RK1_ODOSI8.528e-4557.2450S ribosomal protein L1, chloroplastic OS=Odontel... [more]
RK1_CYAME8.528e-4561.5950S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_PROM41.455e-4458.9050S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNP24.233e-4457.2450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_ANASK1.608e-4358.3350S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]
RL1_ANAD21.608e-4358.3350S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RL1_ANADE2.101e-4358.3350S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RK1_PHATR7.982e-4355.6350S ribosomal protein L1, chloroplastic OS=Phaeoda... [more]
RL1_ANADF1.362e-4255.5650S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC05002E08SK FlavRip1 Citrus clementina cDNA clone C05002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bp
ATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATT
GAACAAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACC
AGATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGG
GACTCATGCCAAATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAG
GCCATAGAAGAATTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAAC
TGGGATTGTCCACATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACC
TCCTCATAAACTTCCTTGCTGCTATTAAATCAATTGAAGCAAACAAGCCA
AAAGGGGCCAAAGGAGTGTACTGGAAAAGTGCTTACATTTGCTCATCAAT
GGGACCTTCCATTCGATTAAACATAAAAGAAATGCTCGATTACAAGCTTC
CATCAAATTTCTAAACGACATAACTAAATTTTGTAAATGATATCTTTAAC
TGTTCAGTCAGCCTCTTTGATACCCATGC
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