CX293920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_THAPS (50S ribosomal protein L1, chloroplastic OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 6.530e-45 Identity = 80/141 (56.74%), Postives = 112/141 (79.43%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 425 EA GAD+VG +LI+ I G + FD L+A+PDMM K+A LG++LGP+GLMP+PK+GTV+TN+ + + +FKKGK EY+ADKTG+VH+ FGKA+FS+D L+ N + +SIE N+P G KG Y+KS +IC+SMGPSI+L++ Sbjct: 86 EANEGGADIVGSQELIDDISQGNLNFDLLVATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTNLTETLSDFKKGKFEYKADKTGVVHVNFGKANFSKDQLMENLTSLYQSIEQNRPSGVKGKYFKSLFICTSMGPSIQLDL 226
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 8.528e-45 Identity = 83/145 (57.24%), Postives = 111/145 (76.55%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 437 EA+ AGAD VG DDLIE+I G + FD LIA+PDMM K+A LG++LGP+GLMP+PK+GTV+T + + EFKKGK EY+ADK G+VH+ FGK++F+ L+ N A KSIE N+P G KG Y+KS +IC++MGPSI+L++ L Sbjct: 86 EAREAGADRVGSDDLIEEISQGNISFDLLIATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTTLTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKYFKSLFICTTMGPSIQLDLNIFL 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 8.528e-45 Identity = 85/138 (61.59%), Postives = 107/138 (77.54%), Query Frame = 3 Query: 18 GADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 431 GADLVG DDL QI + FD LIA+PDMM +A LGKILGPRGLMP+PK+GTVTTN+ +AI+ F++G++EYR DKTGIVH+ FG+ DF+E L N +A +S+E NKP GA G+YWKS I +SM PSIRLNI++ Sbjct: 85 GADLVGSDDLCAQIAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMPSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGIVHLAFGRMDFNEQHLYDNLVAIKESVETNKPSGASGLYWKSFAIATSMSPSIRLNIQQ 222
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 1.455e-44 Identity = 86/146 (58.90%), Postives = 111/146 (76.03%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EAK+AGADL G ++L++ I G M FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVT ++ AI+EFK GK+E+RADK GI+H+ FGKA F+ D LL N ++I+ NKP GAKG +WK+ YI S+MGPSI ++I + D Sbjct: 85 EAKSAGADLAGEEELVDSISKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRADKAGIIHVRFGKASFNADALLENLKTLQETIDRNKPSGAKGRFWKTLYITSTMGPSIEVDIAALQD 230
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.233e-44 Identity = 83/145 (57.24%), Postives = 113/145 (77.93%), Query Frame = 3 Query: 6 AKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 A+ +GADLVG ++LIE I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++ AI FK GK E+RAD+ GIVH+ FGK+ F+ +DLL+N A ++I+ N+P GAKG YW+S Y+ +SMGPSI+++I + D Sbjct: 87 AEESGADLVGSEELIEDIQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMPSPKGGTVTTDVATAIAAFKAGKQEFRADRAGIVHVLFGKSSFAAEDLLVNLKALQETIDRNRPSGAKGRYWRSIYVSASMGPSIQVDINALRD 231
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.608e-43 Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EA+ AGAD+VG +DL E+I+GGFM+FDKLIA+PDMM V LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F D L NF A ++ I KP+ AKGVY K+ + ++MGP I++++ E+ Sbjct: 86 EAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.608e-43 Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EA+ AGAD+VG +DL E+I+GGFM+FDKLIA+PDMM V LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F D L NF A ++ I KP+ AKGVY K+ + ++MGP I++++ E+ Sbjct: 86 EAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.101e-43 Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EA+ AGAD+VG +DL E+I+GGFM+FDKLIA+PDMM V LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F + L NF A ++ I KP+ AKGVY K+ + ++MGP I+L++ E+ Sbjct: 86 EAQEAGADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPEKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLAEL 229
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.982e-43 Identity = 79/142 (55.63%), Postives = 112/142 (78.87%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 428 EAK++G D+VG D+LI QI G + FD LIA+P+MM K+A LG++LGP+GLMP+PK+GTVT+ + + EFKKGK EY+ADKTGIVH+ FGK++F+ + L+ N A +SIE N+P G KG Y+KS IC++MGPS++L+++ Sbjct: 86 EAKSSGGDIVGNDELIAQITQGQINFDLLIATPNMMPKLAKLGRMLGPKGLMPSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGIVHVNFGKSNFTNEQLVENLKALYQSIEQNRPSGVKGKYFKSVSICTTMGPSVKLDLE 227
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ANADF (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplA PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.362e-42 Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EA+ AGAD+VG +DL E+++GGFM+FDK++A+PDMM V LGK+LGPRGLMPNPK GTV+ +I +A++E K GKVE+R +K GIVH+PFGKA F + L NF A ++ I KP+ AKGVY K+ + ++MGP I+L++ E+ Sbjct: 86 EAQEAGADIVGAEDLAEKVQGGFMDFDKVLATPDMMGVVGRLGKVLGPRGLMPNPKVGTVSADIARAVKEQKAGKVEFRVEKAGIVHVPFGKASFEPEKLKANFSAIMEIIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLSEL 229 The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bpback to top |