CX293920

Overview
NameCX293920
Unique NameCX293920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GEOSF (50S ribosomal protein L1 OS=Geobacter sp. (strain FRC-32) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 74/144 (51.39%), Postives = 100/144 (69.44%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434
            EA++AGAD VG DDL+ +I+ G+ EFD  IA+PDMM  V  +GK+LGPRGLMPNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK  F  D L  N LA I ++  +KP  AKG Y K   + S+MGP + L++ ++
Sbjct:   85 EARDAGADFVGADDLVAKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFETDKLKENILALIDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESAA (50S ribosomal protein L1 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 70/140 (50.00%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EAK AGAD VG DDL+E+I+GG+++FDK IA+PDMM  V  +G+ILGPRGLMPN K GTVT ++ +A++E K GK+++R ++ GI+H P GK  F  + LL N  A  ++++  KP  AKG Y KS  + ++MGP ++++
Sbjct:   86 EAKEAGADFVGNDDLVEKIQGGWLDFDKAIATPDMMGTVGKMGRILGPRGLMPNAKTGTVTFDVAKAVQELKAGKIDFRVERAGILHAPMGKVSFGAEKLLDNISAFFETVQRLKPSAAKGTYMKSIAVSTTMGPGVKID 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440
            EA+ AGAD VGGD+L+ +I+G  + EFD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E  L+ NF   + ++   KP  AKG Y KS  + S+MGP I++N  ++++
Sbjct:   86 EAEKAGADYVGGDELVAKIQGENWFEFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ACIBL (50S ribosomal protein L1 OS=Acidobacteria bacterium (strain Ellin345) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VGG+D++E+I K G+ ++D +I++PDMM  V  LGK+LGPRGLMPNPK GTVTT++  A+ E K GKVE+R DKTG+VH+P GK  F  D L+ N    I S+   KP  AKG Y K  Y+ S+MGP I ++
Sbjct:   85 EAEAAGADFVGGEDMVEKIAKEGWTDYDAVISTPDMMRSVGKLGKVLGPRGLMPNPKTGTVTTDVASAVREVKAGKVEFRTDKTGLVHVPVGKISFPPDKLVDNATTLITSVVKAKPSAAKGKYIKGCYLSSTMGPGISID 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESAD (50S ribosomal protein L1 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38
Identity = 68/140 (48.57%), Postives = 100/140 (71.43%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EAK AGAD VGGDDL+ ++K G+++FDK IA+PDMM KV  +G++LGPRGLMPN K GTVT ++  A++E K G+VE++ DK G++H P GK  F  + LL N  + ++++   KP  AKG Y K+  + ++MGP  +++
Sbjct:   85 EAKEAGADFVGGDDLVAKVKDGWLDFDKAIATPDMMAKVGQIGRVLGPRGLMPNAKTGTVTFDVASAVKEVKAGRVEFKVDKAGVLHAPIGKVSFGAEKLLENLKSLLETVNKLKPSSAKGTYMKAVAVATTMGPGFKID 224          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 419
            EA+ AGAD VG DDLI +I  G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYR DK+G +H+P GK  F    LL NF   ++++   KP  AKG Y K+  + S+MGP IR+
Sbjct:   86 EAEAAGADYVGEDDLINKINQGWFDFDVIVATPDMMAQVGRLGRVLGPKGLMPNPKTGTVTFDVTKAVEEIKAGKVEYRVDKSGNIHVPIGKVSFDTPKLLENFQTIVETLHKVKPAAAKGTYVKNIAVASTMGPGIRV 224          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.657e-38
Identity = 73/141 (51.77%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    6 AKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 425
            A+ AGAD+VGG+DLI++I  GFM+FD ++A+PDMM ++   L ++LGPRGL+PNPK+GTV  ++   +   K G++E+R DKTG+VH P GKA F   +L  N+ A + ++EA KP  AKGVY +SAY+ S+MGPSI L +
Sbjct:   87 AEAAGADVVGGEDLIDRIANGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKSGTVGPDVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYRALLSALEAAKPAAAKGVYLRSAYLTSTMGPSIPLTL 227          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.471e-38
Identity = 73/140 (52.14%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VG +DL+E+I+GG+++FD  +A+PD+M  V  LG++LGP+GLMPNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F    LL N+   + ++   KP  AKG Y KS  + S+M P +R+N
Sbjct:   86 EAEAAGADAVGAEDLVEKIQGGWLDFDVAVATPDVMGLVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESHY (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain Y51) GN=rplA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.471e-38
Identity = 71/140 (50.71%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VG +D+I +I+ G+  FD ++A+PDMM  V  LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK  FSE+ L  N+   ++++   KP  AKG Y +S  + S+MGP +R+N
Sbjct:   86 EAEAAGADFVGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225          
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESHD (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.471e-38
Identity = 71/140 (50.71%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422
            EA+ AGAD VG +D+I +I+ G+  FD ++A+PDMM  V  LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK  FSE+ L  N+   ++++   KP  AKG Y +S  + S+MGP +R+N
Sbjct:   86 EAEAAGADFVGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225          
The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_GEOSF1.558e-3851.3950S ribosomal protein L1 OS=Geobacter sp. (strain ... [more]
RL1_DESAA1.558e-3850.0050S ribosomal protein L1 OS=Desulfatibacillum alke... [more]
RL1_ALKOO1.558e-3851.0250S ribosomal protein L1 OS=Alkaliphilus oremlandi... [more]
RL1_ACIBL1.558e-3853.9050S ribosomal protein L1 OS=Acidobacteria bacteriu... [more]
RL1_DESAD2.035e-3848.5750S ribosomal protein L1 OS=Desulfovibrio salexige... [more]
RL1_BACSK2.035e-3852.5250S ribosomal protein L1 OS=Bacillus clausii (stra... [more]
RL1_DEIGD2.657e-3851.7750S ribosomal protein L1 OS=Deinococcus geothermal... [more]
RL1_HELMI3.471e-3852.1450S ribosomal protein L1 OS=Heliobacterium modesti... [more]
RL1_DESHY3.471e-3850.7150S ribosomal protein L1 OS=Desulfitobacterium haf... [more]
RL1_DESHD3.471e-3850.7150S ribosomal protein L1 OS=Desulfitobacterium haf... [more]

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Properties
Property NameValue
Genbank descriptionC05002E08SK FlavRip1 Citrus clementina cDNA clone C05002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bp
ATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATT
GAACAAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACC
AGATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGG
GACTCATGCCAAATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAG
GCCATAGAAGAATTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAAC
TGGGATTGTCCACATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACC
TCCTCATAAACTTCCTTGCTGCTATTAAATCAATTGAAGCAAACAAGCCA
AAAGGGGCCAAAGGAGTGTACTGGAAAAGTGCTTACATTTGCTCATCAAT
GGGACCTTCCATTCGATTAAACATAAAAGAAATGCTCGATTACAAGCTTC
CATCAAATTTCTAAACGACATAACTAAATTTTGTAAATGATATCTTTAAC
TGTTCAGTCAGCCTCTTTGATACCCATGC
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