CX293920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_GEOSF (50S ribosomal protein L1 OS=Geobacter sp. (strain FRC-32) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 74/144 (51.39%), Postives = 100/144 (69.44%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 434 EA++AGAD VG DDL+ +I+ G+ EFD IA+PDMM V +GK+LGPRGLMPNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK F D L N LA I ++ +KP AKG Y K + S+MGP + L++ ++ Sbjct: 85 EARDAGADFVGADDLVAKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFETDKLKENILALIDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESAA (50S ribosomal protein L1 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 70/140 (50.00%), Postives = 102/140 (72.86%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EAK AGAD VG DDL+E+I+GG+++FDK IA+PDMM V +G+ILGPRGLMPN K GTVT ++ +A++E K GK+++R ++ GI+H P GK F + LL N A ++++ KP AKG Y KS + ++MGP ++++ Sbjct: 86 EAKEAGADFVGNDDLVEKIQGGWLDFDKAIATPDMMGTVGKMGRILGPRGLMPNAKTGTVTFDVAKAVQELKAGKIDFRVERAGILHAPMGKVSFGAEKLLDNISAFFETVQRLKPSAAKGTYMKSIAVSTTMGPGVKID 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 440 EA+ AGAD VGGD+L+ +I+G + EFD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E L+ NF + ++ KP AKG Y KS + S+MGP I++N ++++ Sbjct: 86 EAEKAGADYVGGDELVAKIQGENWFEFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_ACIBL (50S ribosomal protein L1 OS=Acidobacteria bacterium (strain Ellin345) GN=rplA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38 Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VGG+D++E+I K G+ ++D +I++PDMM V LGK+LGPRGLMPNPK GTVTT++ A+ E K GKVE+R DKTG+VH+P GK F D L+ N I S+ KP AKG Y K Y+ S+MGP I ++ Sbjct: 85 EAEAAGADFVGGEDMVEKIAKEGWTDYDAVISTPDMMRSVGKLGKVLGPRGLMPNPKTGTVTTDVASAVREVKAGKVEFRTDKTGLVHVPVGKISFPPDKLVDNATTLITSVVKAKPSAAKGKYIKGCYLSSTMGPGISID 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESAD (50S ribosomal protein L1 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplA PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38 Identity = 68/140 (48.57%), Postives = 100/140 (71.43%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EAK AGAD VGGDDL+ ++K G+++FDK IA+PDMM KV +G++LGPRGLMPN K GTVT ++ A++E K G+VE++ DK G++H P GK F + LL N + ++++ KP AKG Y K+ + ++MGP +++ Sbjct: 85 EAKEAGADFVGGDDLVAKVKDGWLDFDKAIATPDMMAKVGQIGRVLGPRGLMPNAKTGTVTFDVASAVKEVKAGRVEFKVDKAGVLHAPIGKVSFGAEKLLENLKSLLETVNKLKPSSAKGTYMKAVAVATTMGPGFKID 224
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38 Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 419 EA+ AGAD VG DDLI +I G+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYR DK+G +H+P GK F LL NF ++++ KP AKG Y K+ + S+MGP IR+ Sbjct: 86 EAEAAGADYVGEDDLINKINQGWFDFDVIVATPDMMAQVGRLGRVLGPKGLMPNPKTGTVTFDVTKAVEEIKAGKVEYRVDKSGNIHVPIGKVSFDTPKLLENFQTIVETLHKVKPAAAKGTYVKNIAVASTMGPGIRV 224
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 2.657e-38 Identity = 73/141 (51.77%), Postives = 104/141 (73.76%), Query Frame = 3 Query: 6 AKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 425 A+ AGAD+VGG+DLI++I GFM+FD ++A+PDMM ++ L ++LGPRGL+PNPK+GTV ++ + K G++E+R DKTG+VH P GKA F +L N+ A + ++EA KP AKGVY +SAY+ S+MGPSI L + Sbjct: 87 AEAAGADVVGGEDLIDRIANGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKSGTVGPDVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYRALLSALEAAKPAAAKGVYLRSAYLTSTMGPSIPLTL 227
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.471e-38 Identity = 73/140 (52.14%), Postives = 101/140 (72.14%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VG +DL+E+I+GG+++FD +A+PD+M V LG++LGP+GLMPNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F LL N+ + ++ KP AKG Y KS + S+M P +R+N Sbjct: 86 EAEAAGADAVGAEDLVEKIQGGWLDFDVAVATPDVMGLVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESHY (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain Y51) GN=rplA PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.471e-38 Identity = 71/140 (50.71%), Postives = 101/140 (72.14%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VG +D+I +I+ G+ FD ++A+PDMM V LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK FSE+ L N+ ++++ KP AKG Y +S + S+MGP +R+N Sbjct: 86 EAEAAGADFVGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225
BLAST of CX293920 vs. ExPASy Swiss-Prot
Match: RL1_DESHD (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplA PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 3.471e-38 Identity = 71/140 (50.71%), Postives = 101/140 (72.14%), Query Frame = 3 Query: 3 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 422 EA+ AGAD VG +D+I +I+ G+ FD ++A+PDMM V LG++LGP+GLMPNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK FSE+ L N+ ++++ KP AKG Y +S + S+MGP +R+N Sbjct: 86 EAEAAGADFVGAEDMIAKIEQGWFGFDVVVATPDMMGMVGKLGRVLGPKGLMPNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225 The following BLAST results are available for this feature:
BLAST of CX293920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293920 ID=CX293920; Name=CX293920; organism=Citrus clementina; type=EST; length=529bpback to top |