CX293927

Overview
NameCX293927
Unique NameCX293927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig569 contig Ccv1_Contig569:210..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.395e-28
Identity = 65/152 (42.76%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVL 462
            +DGDF L+ESRAI +Y A  Y  +G +L+    ++   +   +E+E+H ++P   +L  + +  P +G   D+ +V+E + KL K LDVYE RL +SKYLA D F+L DL  IP   YL+G   ++ +  +R HVSAW  DI++RPS KKVL
Sbjct:   59 EDGDFKLFESRAITQYIAHFYSDKGNQLVSLGSKDIAGIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.108e-28
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLE 465
            +DGD  L+ESRAI +Y A  Y   G +L+ +  ++  ++  W+EVE   + P   +LT +L   P  G   D+  VKES+ +L K LD+YE RL++SKYL GD F+L DL HIP  +YL+    ++ +   R  VSAW  DI  RP+W K LE
Sbjct:   58 EDGDLKLFESRAITQYIAHVYADNGYQLILQDPKKMPIMSVWMEVEGQKFEPHASKLTWELGIKPIIGMTTDDDAVKESEVQLSKVLDIYETRLAESKYLGGDSFTLVDLHHIPNIYYLMSTKVKE-VFDSRPRVSAWCADILARPAWVKGLE 209          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GST16_ARATH (Glutathione S-transferase 16 OS=Arabidopsis thaliana GN=GST16 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.042e-28
Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELL---GKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVL 462
            +DGD  L+ESRAI +Y A +Y +QGT LL    K I +  ++   ++VEAH ++P   +L  + +F   +G   D+ +V E + KL K LDVYE RL + KYLAG+ F+L DL HIP   YL+G   ++ +  +R  V+ W  +I+ RP+ +KVL
Sbjct:   59 EDGDLKLFESRAITQYIAHRYENQGTNLLPADSKNIAQYAIMSIGIQVEAHQFDPVASKLAWEQVFKFNYGLNTDQAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPVIQYLLGTPTKK-LFTERPRVNEWVAEITKRPASEKVL 212          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.542e-27
Identity = 64/153 (41.83%), Postives = 91/153 (59.48%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLE 465
            +DGD  L+ESRAI +Y A  Y   G +L+ +  ++   +  W+EVE   + P   +LT +L   P  G   D+  VKES+ +L K LD+YE +L++SKYL GD F+L DL HIP  +YL+    ++ +   R  VSAW  DI  RP+W K LE
Sbjct:   58 EDGDLKLFESRAITQYIAHVYADNGYQLILQDPKKMPSMSVWMEVEGQKFEPPATKLTWELGIKPIIGMTTDDAAVKESEAQLSKVLDIYETQLAESKYLGGDSFTLVDLHHIPNIYYLMSSKVKE-VFDSRPRVSAWCADILARPAWVKGLE 209          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF4_ARATH (Glutathione S-transferase PM24 OS=Arabidopsis thaliana GN=PM24.1 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.436e-27
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELL---GKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKV 459
            +DGD  L+ESRAI +Y A +Y +QGT LL    K I +  ++   ++VE H ++P   +L  + +F   +G   DE +V E + KL K LDVYE RL + KYLAG+ F+L DL HIP   YL+G   ++ +  +R  V+ W  +I+ RP+ +KV
Sbjct:   59 EDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKK-LFTERPRVNEWVAEITKRPASEKV 211          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.861e-27
Identity = 66/156 (42.31%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    1 VIQDGDFILYESRAIMRYYAEKYRSQGTELLGK-TIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLE 465
            V++DGD  L+ESRAI R+   K++    ELLG   +E+  +V+ WLEVEAH  +P    + ++ +F+P  GR  ++ +V E+ EKL K L+VYE RL+   YLAGDF SLADLS     H L+       ++    HVSAWW  ++ RP+  KV +
Sbjct:   59 VLEDGDLTLFESRAIARHVLRKHKP---ELLGGGRLEQTAMVDVWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDENVEKLKKVLEVYEARLATCTYLAGDFLSLADLSPFTIMHCLMA-TEYAALVHALPHVSAWWQGLAARPAANKVAQ 210          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF1_WHEAT (Glutathione S-transferase 1 OS=Triticum aestivum GN=GSTA1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.480e-26
Identity = 69/167 (41.32%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYR-SQGTELLGKT--IEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKF----GRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHY-LVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCKTPF 483
            QDGD +L+ESRAI +Y   KY  + G +LLG+   IEE  +V+ W EVEA  Y PAI  +  + +  P      G   ++ +V ES E+L   L +YE RL KS+YLAGD  + ADL+HIPFT Y +  P  +  +  D   V AWW+ +  RP+ ++V +   T F
Sbjct:   59 QDGDLVLFESRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSITFADLNHIPFTFYFMTTPYAK--VFDDYPKVKAWWEMLMARPAVQRVCKHMPTEF 223          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF2_WHEAT (Glutathione S-transferase 2 OS=Triticum aestivum GN=GSTA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYR-SQGTELLGKT--IEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKF----GRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHY-LVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCKTPF 483
            QDG+ +  +SRAI +Y   KY  + G +LLG+   IEE  +V+ W EVEA  Y PAI  +  + +  P      G   ++ +V ES E+L   L +YE RL KS+YLAGD  S ADL+HIPFT Y +  P  +  +  +   V AWW+ +  RP+ ++V +   T F
Sbjct:   59 QDGESLHIKSRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSISFADLNHIPFTFYFMTTPYAK--VFDEYPKVKAWWEMLMARPAVQRVCKHMPTEF 223          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF5_ARATH (Glutathione S-transferase PM239X14 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 56/147 (38.10%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 VIQDGDFI-LYESRAIMRYYAEKYRSQGTELLGKTIEER--GLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQ---HMIRDRKHVSAWW 423
            V++D D   +YESRAI RY   KY  +G+ LL    + +  GL EQ   VE  +++P    L  + +F+   G   +E+L K+  + L   +D YE  LSK KYLAG+ F+LADL H+P+     G M  Q    ++  + HV AWW
Sbjct:   58 VLEDEDGTKIYESRAISRYLVAKY-GKGSSLLPSPSDPKAYGLFEQAASVEYSSFDPPASSLAYERVFAGMRGLKTNEELAKKYVDTLNAKMDGYERILSKQKYLAGNDFTLADLFHLPY-----GAMVAQLEPTVLDSKPHVKAWW 198          
The following BLAST results are available for this feature:
BLAST of CX293927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GST11_ARATH1.395e-2842.76Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF2_TOBAC3.108e-2842.48Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GST16_ARATH9.042e-2841.29Glutathione S-transferase 16 OS=Arabidopsis thalia... [more]
GSTF1_TOBAC1.542e-2741.83Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]
GSTF4_ARATH3.436e-2740.91Glutathione S-transferase PM24 OS=Arabidopsis thal... [more]
GSTF4_MAIZE5.861e-2742.31Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
GSTF1_WHEAT6.480e-2641.32Glutathione S-transferase 1 OS=Triticum aestivum G... [more]
GSTF2_WHEAT3.010e-2339.52Glutathione S-transferase 2 OS=Triticum aestivum G... [more]
GSTF5_ARATH4.655e-1638.10Glutathione S-transferase PM239X14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05002F03SK FlavRip1 Citrus clementina cDNA clone C05002F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293927 ID=CX293927; Name=CX293927; organism=Citrus clementina; type=EST; length=517bp
GTTATTCAAGATGGAGATTTTATTTTATACGAGTCGCGAGCTATCATGAG
GTACTATGCCGAAAAGTACAGGTCTCAAGGAACCGAACTTCTGGGAAAAA
CAATTGAAGAAAGAGGCCTGGTGGAACAGTGGCTAGAAGTAGAGGCACAC
AACTACAACCCAGCAATTTACGAGCTGACCATGCAACTTTTATTTTCTCC
CAAGTTTGGACGTCCCGTTGATGAAAAATTGGTGAAGGAGAGTGACGAAA
AGCTTGGAAAAACGCTCGACGTTTACGAGGGGAGGCTGTCGAAGAGCAAG
TATTTGGCTGGTGATTTCTTCAGCCTGGCTGATCTGAGTCACATTCCATT
TACCCACTACTTGGTTGGGCCGATGGGGAGACAGCATATGATTAGAGACA
GGAAGCATGTGAGTGCTTGGTGGGATGATATTAGCAACAGGCCGTCCTGG
AAGAAAGTCCTTGAGCTTTGTAAGACTCCTTTCGGCTGAGCTTGATTGTA
TGTGTTTCGATTTTCGG
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