CX293939

Overview
NameCX293939
Unique NameCX293939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRL-----AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA +++  N++EA   + E+ ++ +  G   QR+AAY  E ++AR+ +S   LY  L     P++ RL     AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+
Sbjct:  286 LLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLP-NPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 430          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRL-----AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA +++  N++EA   + E+ ++ +  G   QR+AAY  E ++AR+ +S   LY  L     P++ RL     AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+
Sbjct:  294 LLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLP-NPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 438          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 57/145 (39.31%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDR----LAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA +++  N++EA   + E+ ++ +  G   QR+AAY  E ++AR+ +S   LY  L    P  +       AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+
Sbjct:  295 LLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 439          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 57/145 (39.31%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDR----LAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA +++  N++EA   + E+ ++ +  G   QR+AAY  E ++AR+ +S   LY  L    P  +       AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+
Sbjct:  295 LLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 439          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.826e-20
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRL-----AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA  ++  N+++A   + E+ ++ +  G   QR+AAY  E ++AR+ +S   LY  L    P ++ RL     AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+
Sbjct:  302 LLLQCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAA-RLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGL 446          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            L+ CA  +   N++ A  ++ ++  +   Q    +++A Y  EGLA R       +Y+    K   SS         +E CP  KF    AN AI+EAF+G+KRVH+IDF + QG Q+  L+Q +A  PG  P  RLTG+  P +
Sbjct:  218 LMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARR-------IYRLYPDKPLDSSFSDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPST 355          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQI------LFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 488
            L+ CA  +   N   A  ++ ++  + S QG   +++AAY  E LA R+           + + PP S  L A          +E CP  KF    AN AI+EAF G +RVH++DF I QG Q+  L+Q +A  PG  P  RLTGV  P+
Sbjct:  247 LLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRV----------YRFRPPPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQ 386          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSS---DRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA  ++  N++EA  ++ ++ ++ +  G   QR+AAY  E ++AR+  S   +Y +      P S      +A Q+   + P  KF    AN AI EAF+ E RVHIID DI QG Q+  L   +AS PG  P +RLTG+
Sbjct:  420 LLLQCAEAVAADNLDEANRMLLQVSELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPLSLNQKMASAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGL 563          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQIL-----FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 488
            L+ CA  +   N+  A  ++ ++  + + QG   +++AAY  E LA R+     F ++     +P SS   AA   L     +E CP  KF    AN AI+EAF G +RVH++DF I QG Q+  L+Q +A  PG  P  RLTGV  P+
Sbjct:  234 LLACAEAVQQENLSAAEALVKQIPLLAASQGGAMRKVAAYFGEALARRV-----FRFRP----QPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQ 373          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQIL-----FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 488
            L+ CA  +   N+  A  ++ ++  + + QG   +++AAY  E LA R+     F ++     +P SS   AA   L     +E CP  KF    AN AI+EAF G +RVH++DF I QG Q+  L+Q +A  PG  P  RLTGV  P+
Sbjct:  238 LLACAEAVQQENLSAAEALVKQIPLLAASQGGAMRKVAAYFGEALARRV-----FRFRP----QPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQ 377          
The following BLAST results are available for this feature:
BLAST of CX293939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SCR1_ORYSJ7.709e-2140.41Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCR1_ORYSI7.709e-2140.41Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCR2_ORYSJ1.315e-2039.31Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI1.315e-2039.31Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR_MAIZE3.826e-2039.73Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
GAI1_VITVI1.899e-1935.17DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
DWRF8_MAIZE1.899e-1936.00DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SCR_IPONI9.423e-1937.50Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SLN1_HORVU1.231e-1836.91DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT1.231e-1836.91DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]

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Properties
Property NameValue
Genbank descriptionC05002G10SK FlavRip1 Citrus clementina cDNA clone C05002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293939 ID=CX293939; Name=CX293939; organism=Citrus clementina; type=EST; length=505bp
CCGAATTCTGCACGAGGGAAGTATCACAATTATCTCCTCGGACTCCTAAG
CAGTTGCTTATAGATTGTGCTGCTACACTTTCTGATGGAAACATTGAGGA
AGCAACAACTATAATAAATGAACTCCGGCAGATGGTTTCAATTCAAGGAG
ATCCTCCTCAGAGGATTGCAGCTTACATGGTGGAAGGTCTTGCAGCTCGC
ATGGCTGCCTCTGGCAAGTTTCTCTATAAAGCTCTAAAATGCAAAGAGCC
CCCTTCTTCTGACAGACTAGCAGCAATGCAGATCCTCTTTGAGGTGTGTC
CTTGTTTTAAATTTGGATTTATGGCAGCAAATGGTGCAATTATAGAGGCA
TTTAAAGGTGAAAAGAGAGTACATATAATAGATTTTGACATAAATCAAGG
TAGTCAATATATAACACTGATACAAACAATTGCTTCTCTGCCTGGTAATC
GACCTCACTTGAGGTTAACTGGGGTTGATGATCCAGAGTCAGTTCAACGT
CTGGT
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