CX293939

Overview
NameCX293939
Unique NameCX293939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.581e-18
Identity = 52/149 (34.90%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAI--IEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 488
            + +L+ CA  +S  +   A  +++ +RQ  S  GD  +R+A Y    L AR+A  G  +Y AL  K+  +SD L A Q    VCP  K   + AN +I  + +    K +HIIDF I+ G Q+ +LI  +A   G+   LR+TG++ P+
Sbjct:  319 RTMLVSCAQAVSINDRRTADELLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTSTSDMLKAYQTYISVCPFKKIAIIFANHSIMRLASSANAKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQ 467          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.977e-18
Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = 3
Query:   48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIA-SLPGNRPHLRLTGVDDPE 488
            + LL+ CA  +S  +   A  ++ ++R+  S  G+  +R+A Y    L AR+A +G  +Y AL  K+  ++D L A Q    VCP  K   + AN +++        +HIIDF I+ G Q+  LI  ++ S PG  P LR+TG++ P+
Sbjct:  394 RTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQ 541          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.977e-18
Identity = 50/144 (34.72%), Postives = 76/144 (52.78%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILF-EVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 485
            L+ CA  +   N+  A  ++ ++  +   Q    +++A Y  E LA R       +Y+    + P        +Q+ F E CP  KF    AN AI+EAF+G+KRVH+IDF ++QG Q+  L+Q +A  PG  P  RLTG+  P
Sbjct:  173 LLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARR-------IYRLSPSQSPIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPP 309          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 488
            L+ CA  +   N   A  ++ ++  + + QG   +++AAY  E LA R+    +F        +   +D L A    +E CP  KF    AN AI+EAF G  RVH++DF I QG Q+  L+Q +A  PG  P  RLTGV  P+
Sbjct:  245 LLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVY---RFRPADSTLLDAAFADLLHAH--FYESCPYLKFAHFTANQAILEAFAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQ 383          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.042e-17
Identity = 51/145 (35.17%), Postives = 75/145 (51.72%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQIL--FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 485
            L+ CA  +   N+  A  ++  +  +   Q    +++A +  E LA R       +Y+   C E P    +  M  +  +E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  LIQ +A  P   P  RLTG+  P
Sbjct:  215 LMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARR-------IYRL--CPENPLDRSVLDMLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPP 350          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 485
            L+ CA  +   N+  A  ++ ++  +   Q    +++A Y  E LA R+        +   C     SD L      +E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A   G  P  RLTG+  P
Sbjct:  225 LMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRLSPPQNQIDHCL----SDTL--QMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPP 361          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILF-EVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 485
            L+ CA  +   N+  A  ++ ++  +   Q    +++A Y  E LA R       +Y+    +          +Q+ F E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A   G  P  RLTG+  P
Sbjct:  212 LMACAEAVQSSNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARR-------IYRLSPPQTQIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPP 348          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.152e-16
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALK--CKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 488
            L+ CA  +   N++ A  ++  +  + S Q    +++A Y  E LA R       +Y+       +P  +D+L      +E CP  KF    AN AI+EAF    RVH+IDF + QG Q+  L+Q +A  PG  P  RLTG+  P+
Sbjct:  175 LMACAEAVQQDNLKLADALVKHIGLLASSQTGAMRKVATYFAEALARR-------IYRIFPPDSLDPSYNDKLQIP--FYETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQ 311          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.152e-16
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQIL--FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 485
            L+ CA  +   N+  A  +   +  +   Q    +++A +  E LA R       +Y+   C E P    ++ M  L  +E  P  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A  P   P  RLTG+  P
Sbjct:  222 LMACAEAVQQNNLNLAEALEKRIGYLAVSQAGAMRKVATFFAEALARR-------IYRV--CPENPLDHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPP 357          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   57 LIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRP-HLRLTGVDDP 485
            + DCA  +SD +  EA+  + ++R+ VS  GDP +R+A Y  E L+ R++ +      A       + D + + + L + CP  KF  + AN AI+EA +   ++HI+DF I QG Q+  L+Q +A+    +P  +R++G+  P
Sbjct:  221 IYDCAR-ISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSP----ATSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAP 359          
The following BLAST results are available for this feature:
BLAST of CX293939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SCL33_ARATH3.581e-1834.90Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL14_ARATH7.977e-1833.78Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
GAI_ARATH7.977e-1834.72DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
SLR1_ORYSJ1.042e-1736.11DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
GAIP_CUCMA1.042e-1735.17DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
RGA_ARATH5.171e-1734.97DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
RGA1_BRACM5.171e-1734.03DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
GAI_GOSHI1.152e-1633.56DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
GAIPB_CUCMA1.152e-1634.48DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
SCL4_ARATH1.504e-1632.64Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC05002G10SK FlavRip1 Citrus clementina cDNA clone C05002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293939 ID=CX293939; Name=CX293939; organism=Citrus clementina; type=EST; length=505bp
CCGAATTCTGCACGAGGGAAGTATCACAATTATCTCCTCGGACTCCTAAG
CAGTTGCTTATAGATTGTGCTGCTACACTTTCTGATGGAAACATTGAGGA
AGCAACAACTATAATAAATGAACTCCGGCAGATGGTTTCAATTCAAGGAG
ATCCTCCTCAGAGGATTGCAGCTTACATGGTGGAAGGTCTTGCAGCTCGC
ATGGCTGCCTCTGGCAAGTTTCTCTATAAAGCTCTAAAATGCAAAGAGCC
CCCTTCTTCTGACAGACTAGCAGCAATGCAGATCCTCTTTGAGGTGTGTC
CTTGTTTTAAATTTGGATTTATGGCAGCAAATGGTGCAATTATAGAGGCA
TTTAAAGGTGAAAAGAGAGTACATATAATAGATTTTGACATAAATCAAGG
TAGTCAATATATAACACTGATACAAACAATTGCTTCTCTGCCTGGTAATC
GACCTCACTTGAGGTTAACTGGGGTTGATGATCCAGAGTCAGTTCAACGT
CTGGT
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