CX293939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.351e-14 Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSS----DRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491 + LL CA ++ + AT + E+R S GD QR+A Y E L AR+ + + + P S+ D L A ++ CP + + AAN +I E ++HI+DF + G Q+ L++ ++ PG P LR+TG++ P++ Sbjct: 225 RSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGN---ISPPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQA 373
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13 Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 3 Query: 54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQ-RIAAYMVEGLAARMAASGKFLYKALKCKE---PPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDD 482 LL C + NI I + S +G P R+ AY +E LA R+A ++ +E + A++ L +V P KF AN ++ AF+G++RVHIIDFDI QG Q+ + Q++AS H+R+TG+ + Sbjct: 277 LLTGCLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGE 423
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12 Identity = 49/159 (30.82%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 39 RTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPS----SDRLAAMQILFEVCPCFKFGFMAANGAIIEAF--------KGEKRVHIIDFDINQGSQYITLIQTIASLPGNR-PHLRLTGV 476 R QLL++CA +++ + + ++ L ++ S GD Q++A+Y ++GL AR+ ASG+ + L + S R A++ E+ P FG +AANGAI+E+F +R HI+D +Q+ TL++ +A+ + PHL +T V Sbjct: 190 RWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRFQ-ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTV 347
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12 Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 3 Query: 39 RTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPS----SDRLAAMQILFEVCPCFKFGFMAANGAIIEAF--------KGEKRVHIIDFDINQGSQYITLIQTIASLPGNR-PHLRLTGV 476 R QLL++CA +++ + + ++ L ++ S GD Q++A+Y ++GL AR+ ASG + L + S R A++ E+ P FG +AANGAI+E+F +R HI+D +Q+ TL++ +A+ + PHL +T V Sbjct: 190 RWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRRTALRFQ-ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTV 347
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11 Identity = 43/140 (30.71%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 69 AATLSDGNIEEATTIINELRQMVSIQGDPP--QRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIAS--LPGNRPHLRLTGV 476 A+T ++ + E I+ L+ +VS GD +R+AA+ GL+ + + + +D ++A ++L + P FG++ A AI+EA K E+R+HI+D+DIN+G Q+ +L+Q + S + HLR+T + Sbjct: 114 ASTGANKSRELTRVILARLKDLVS-PGDRTNMERLAAHFTNGLSKLLERDSVLCPQQHRDDVYDQADVISAFELLQNMSPYVNFGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLMQALVSRNTGPSAQHLRITAL 252
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11 Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 3 Query: 123 LRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRP-HLRLTGVDDP 485 +++ VS GDP QR+ Y E L+ + S D + + + L + CP KF + AN AI+EA +HI+DF I QG Q+ L+Q +A+ +P +R++G+ P Sbjct: 198 IKESVSESGDPIQRVGYYFAEALSHKETESPS------SSSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQGIQWSALLQALATRSSGKPTRIRISGIPAP 313 The following BLAST results are available for this feature:
BLAST of CX293939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293939 ID=CX293939; Name=CX293939; organism=Citrus clementina; type=EST; length=505bpback to top |