CX293939

Overview
NameCX293939
Unique NameCX293939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig525 contig Ccv1_Contig525:1..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.351e-14
Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 3
Query:   48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSS----DRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            + LL  CA  ++  +   AT  + E+R   S  GD  QR+A Y  E L AR+  +   +   +    P S+    D L A ++    CP +   + AAN +I E      ++HI+DF +  G Q+  L++ ++  PG  P LR+TG++ P++
Sbjct:  225 RSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGN---ISPPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQA 373          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13
Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQ-RIAAYMVEGLAARMAASGKFLYKALKCKE---PPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDD 482
            LL  C   +   NI      I     + S +G  P  R+ AY +E LA R+A     ++     +E       +   A++ L +V P  KF    AN  ++ AF+G++RVHIIDFDI QG Q+ +  Q++AS      H+R+TG+ +
Sbjct:  277 LLTGCLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGE 423          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 49/159 (30.82%), Postives = 85/159 (53.46%), Query Frame = 3
Query:   39 RTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPS----SDRLAAMQILFEVCPCFKFGFMAANGAIIEAF--------KGEKRVHIIDFDINQGSQYITLIQTIASLPGNR-PHLRLTGV 476
            R   QLL++CA +++  + +    ++  L ++ S  GD  Q++A+Y ++GL AR+ ASG+   + L      +    S R  A++   E+ P   FG +AANGAI+E+F           +R HI+D      +Q+ TL++ +A+   +  PHL +T V
Sbjct:  190 RWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRFQ-ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTV 347          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.248e-12
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 3
Query:   39 RTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPS----SDRLAAMQILFEVCPCFKFGFMAANGAIIEAF--------KGEKRVHIIDFDINQGSQYITLIQTIASLPGNR-PHLRLTGV 476
            R   QLL++CA +++  + +    ++  L ++ S  GD  Q++A+Y ++GL AR+ ASG    + L      +    S R  A++   E+ P   FG +AANGAI+E+F           +R HI+D      +Q+ TL++ +A+   +  PHL +T V
Sbjct:  190 RWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRRTALRFQ-ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTV 347          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 43/140 (30.71%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   69 AATLSDGNIEEATTIINELRQMVSIQGDPP--QRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIAS--LPGNRPHLRLTGV 476
            A+T ++ + E    I+  L+ +VS  GD    +R+AA+   GL+  +        +  +      +D ++A ++L  + P   FG++ A  AI+EA K E+R+HI+D+DIN+G Q+ +L+Q + S     +  HLR+T +
Sbjct:  114 ASTGANKSRELTRVILARLKDLVS-PGDRTNMERLAAHFTNGLSKLLERDSVLCPQQHRDDVYDQADVISAFELLQNMSPYVNFGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLMQALVSRNTGPSAQHLRITAL 252          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  123 LRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRP-HLRLTGVDDP 485
            +++ VS  GDP QR+  Y  E L+ +   S                D + + + L + CP  KF  + AN AI+EA      +HI+DF I QG Q+  L+Q +A+    +P  +R++G+  P
Sbjct:  198 IKESVSESGDPIQRVGYYFAEALSHKETESPS------SSSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQGIQWSALLQALATRSSGKPTRIRISGIPAP 313          
The following BLAST results are available for this feature:
BLAST of CX293939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SCL11_ARATH5.351e-1430.26Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL28_ARATH2.033e-1332.65Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SHR1_ORYSI1.318e-1230.82Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica... [more]
SHR1_ORYSJ2.248e-1230.82Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japoni... [more]
SCL26_ARATH1.457e-1130.71Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
SCL7_ARATH3.246e-1131.15Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC05002G10SK FlavRip1 Citrus clementina cDNA clone C05002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293939 ID=CX293939; Name=CX293939; organism=Citrus clementina; type=EST; length=505bp
CCGAATTCTGCACGAGGGAAGTATCACAATTATCTCCTCGGACTCCTAAG
CAGTTGCTTATAGATTGTGCTGCTACACTTTCTGATGGAAACATTGAGGA
AGCAACAACTATAATAAATGAACTCCGGCAGATGGTTTCAATTCAAGGAG
ATCCTCCTCAGAGGATTGCAGCTTACATGGTGGAAGGTCTTGCAGCTCGC
ATGGCTGCCTCTGGCAAGTTTCTCTATAAAGCTCTAAAATGCAAAGAGCC
CCCTTCTTCTGACAGACTAGCAGCAATGCAGATCCTCTTTGAGGTGTGTC
CTTGTTTTAAATTTGGATTTATGGCAGCAAATGGTGCAATTATAGAGGCA
TTTAAAGGTGAAAAGAGAGTACATATAATAGATTTTGACATAAATCAAGG
TAGTCAATATATAACACTGATACAAACAATTGCTTCTCTGCCTGGTAATC
GACCTCACTTGAGGTTAACTGGGGTTGATGATCCAGAGTCAGTTCAACGT
CTGGT
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