CX293957

Overview
NameCX293957
Unique NameCX293957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:5..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.593e-16
Identity = 29/65 (44.62%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  207 EQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +++ +    ++ ++VA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+  AG DA+  FEDVG
Sbjct:   14 QEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVG 78          

HSP 2 Score: 31.187 bits (69), Expect = 4.593e-16
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPS 459
            S  AREM+ +YYIGDI PS
Sbjct:   80 SSDAREMLKQYYIGDIHPS 98          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.970e-16
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  219 SDPKI--HQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            SDP +  ++ ++VA  N  ++ W++I G+VYD++ F+ +HPGG+EVL+  AG DAT  FEDVG
Sbjct:   16 SDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG 78          

HSP 2 Score: 30.0314 bits (66), Expect = 5.970e-16
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRK 474
            S  AREM+ +YYIGD+ P+ +  K
Sbjct:   80 SPDAREMLKQYYIGDVHPNDLKPK 103          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.237e-15
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  225 PKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            PK++ +Q+VA HN  ++ W+II  KVYDVS F D+HPGGDE+++   G+DAT  F D+G
Sbjct:    2 PKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIG 60          

HSP 2 Score: 22.7126 bits (47), Expect = 2.237e-15
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDK 519
            SD A  ++   YIGD+D ++   +R  +     + NQ K
Sbjct:   62 SDEALRLLKGLYIGDVDKTS---ERVSVEKVSTSENQSK 97          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.756e-15
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  246 QVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +VA HN  KD WL+I   +YDV++F+++HPGG+EVLI  AGKDAT +FEDVG
Sbjct:   13 EVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVG 64          

HSP 2 Score: 23.483 bits (49), Expect = 3.756e-15
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDI 450
            S+ AR+MM KY IG++
Sbjct:   66 SNDARDMMKKYKIGEL 81          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-14
Identity = 27/58 (46.55%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            K  + +++  HN +KD +++I+GKVYDVS+F DDHPGG ++++  AG+DAT  ++D+G
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIG 61          

HSP 2 Score: 26.5646 bits (57), Expect = 3.067e-14
Identity = 14/41 (34.15%), Postives = 24/41 (58.54%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTP 525
            S +A E++++ YIGD+ P T  R +    L++P    + TP
Sbjct:   63 SIAADELLEEMYIGDLKPGTEERLK---ELKKPRSFDNDTP 100          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.552e-13
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            K +  +++  HN +K  WLI+  KVYD++ F+++HPGG+EVL   AG DAT DFEDVG
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVG 63          

HSP 2 Score: 22.7126 bits (47), Expect = 1.552e-13
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPR 471
            S  ARE+   Y IG++ P   P+
Sbjct:   65 STDARELSKTYIIGELHPDDRPK 87          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.482e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  204 SEQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +EQ     K +  +++  HN +K  WLI+  KVYD++ F+++HPGG+EVL   AG DAT +FEDVG
Sbjct:    2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67          

HSP 2 Score: 22.3274 bits (46), Expect = 2.482e-13
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPR 471
            S  AREM   + IG++ P   P+
Sbjct:   69 STDAREMSKTFIIGELHPDDRPK 91          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.144e-13
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  225 PKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDV 398
            P+ +  ++VA HN  + CW +  GKVYD + ++D+HPGG E ++  AG DAT++F  +
Sbjct:  497 PRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI 554          

HSP 2 Score: 27.335 bits (59), Expect = 5.144e-13
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQP 501
            S  A+ M+ +YYIGD+  S      A +P  QP
Sbjct:  556 SSKAKAMLAQYYIGDLVASKPAAAGATVPEPQP 588          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 9.183e-13
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  204 SEQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +EQ   D K +  +++  H  +K  W+I+  KVYD++ F+++HPGG+EVL   AG DAT +FEDVG
Sbjct:    2 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67          

HSP 2 Score: 20.7866 bits (42), Expect = 9.183e-13
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDP 456
            S  ARE+   Y IG++ P
Sbjct:   69 STDARELSKTYIIGELHP 86          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  240 FQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +Q VA HN  KD +++I  KVYD++ F+D+HPGG+EVL+  AG+D+T  FEDVG
Sbjct:    7 YQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVG 60          
The following BLAST results are available for this feature:
BLAST of CX293957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CYB5B_HUMAN4.593e-1644.62Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5B_RAT5.970e-1647.62Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_YEAST2.237e-1552.54Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_DROME3.756e-1561.54Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB51_SCHPO3.067e-1446.55Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_ALOSE1.552e-1351.72Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_HUMAN2.482e-1346.97Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
NIA_VOLCA5.144e-1341.38Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_RAT9.183e-1345.45Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_NEUCR1.099e-1255.56Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]

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Properties
Property NameValue
Genbank descriptionC05004A12SK FlavRip1 Citrus clementina cDNA clone C05004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293957 ID=CX293957; Name=CX293957; organism=Citrus clementina; type=EST; length=590bp
TTCGGCACATCACAGAATTCCTCACTTTGTTTGATTTCAAAATCTACTTC
TTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTGATCA
AAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTACTTT
ATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAGCTGC
AGTAGTGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCCAACAGGT
CGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGCAAGG
TGTATGATGTGTCCTCATTCATGGATGATCACCCTGGAGGAGATGAGGTT
TTGATTTCTGCAGCTGGGAAAGATGCAACAAATGACTTTGAAGATGTGGG
TCAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGTGACATT
GATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACTGGAGCAACC
TGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTCTACAGA
TTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGTGGT
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