CX293957

Overview
NameCX293957
Unique NameCX293957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:5..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  204 SEQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +EQ     K +  +++  HN +K  WLI+  KVYD++ F++DHPGG+EVL   AG DAT +FED+G
Sbjct:    2 AEQSDKAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIG 67          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  210 QMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            Q   D K +  +++  HN +K  WLI+  KVYD++ F+++HPGG+EVL   AG DAT +FEDVG
Sbjct:    4 QSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  204 SEQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +EQ     K +  +++  HN +K  WLI+  KVYD++ F+++HPGG+EVL   AG DAT +FEDVG
Sbjct:    2 AEQSDKAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  204 SEQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +E+ +   K +  +++  HN +K  WLI+  KVYD++ F+++HPGG+EVL   AG DAT +FEDVG
Sbjct:    2 AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 27/57 (47.37%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  231 IHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            I+  ++VA H    D W+I++GKVY++S+++D+HPGG+EV++  AG DAT  F+D+G
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIG 66          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.409e-12
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  210 QMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            Q   D K +  +++  H  +K  W+I+  KVYD++ F+++HPGG+EVL   AG DAT +FEDVG
Sbjct:    4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67          

HSP 2 Score: 20.7866 bits (42), Expect = 4.409e-12
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDP 456
            S  ARE+   Y IG++ P
Sbjct:   69 STDARELSKTYIIGELHP 86          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            + ++ ++V  HN ++  W+I+  ++YD++ F+D+HPGG+EVL   AG DAT +FEDVG
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVG 72          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            KI    +V+ H    D W++I  KVYD++ F+ +HPGG+EVL+   GKDAT  FED+G
Sbjct:    4 KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIG 61          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  216 ASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            + D K     +VA +N     W II   VYDV++F+++HPGG+EVLI  AGKDAT  FEDVG
Sbjct:    3 SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVG 64          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 3
Query:  243 QQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            ++V  HN   D ++++  KVYD+S F+D HPGG+EVL+  AG+DA+  FEDVG
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVG 61          
The following BLAST results are available for this feature:
BLAST of CX293957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CYB5_HORSE1.099e-1246.97Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT1.436e-1248.44Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_PIG1.875e-1246.97Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_BOVIN2.449e-1245.45Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_CANTR4.178e-1247.37Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
CYB5_MOUSE4.409e-1245.31Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_CHICK1.216e-1144.83Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
CYB5_RHIST1.588e-1148.28Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_MUSDO3.537e-1151.61Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB52_SCHPO3.537e-1150.94Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC05004A12SK FlavRip1 Citrus clementina cDNA clone C05004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293957 ID=CX293957; Name=CX293957; organism=Citrus clementina; type=EST; length=590bp
TTCGGCACATCACAGAATTCCTCACTTTGTTTGATTTCAAAATCTACTTC
TTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTGATCA
AAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTACTTT
ATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAGCTGC
AGTAGTGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCCAACAGGT
CGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGCAAGG
TGTATGATGTGTCCTCATTCATGGATGATCACCCTGGAGGAGATGAGGTT
TTGATTTCTGCAGCTGGGAAAGATGCAACAAATGACTTTGAAGATGTGGG
TCAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGTGACATT
GATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACTGGAGCAACC
TGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTCTACAGA
TTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGTGGT
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