CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 3.900e-62
Identity = 115/139 (82.73%), Postives = 128/139 (92.09%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGGS+G KFR+SLGLPV A +NCAD+TGAKNLYIISVKGIKG+LNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEM GSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 6.653e-62
Identity = 112/139 (80.58%), Postives = 128/139 (92.09%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGGSAG KFR+SLGLPV A +NCAD+TGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEM GSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.936e-61
Identity = 115/139 (82.73%), Postives = 126/139 (90.65%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGGS+G KFR+SLGLPV A +NCAD+TGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEM GSAITGP+ KECADLWP IAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXIASNAGSI 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 2.528e-61
Identity = 111/139 (79.86%), Postives = 129/139 (92.81%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGG+AG KFR+SLGLPV A +NCAD+TGAKNLY+I+V GI+GRLNRLP+A VGDM +ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEM GSAITGP+ KECADLWPRIAS A++I
Sbjct:    1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.616e-58
Identity = 104/137 (75.91%), Postives = 121/137 (88.32%), Query Frame = 1
Query:   22 RGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            RGRG ++G K+RM+LGLPV A +NCAD++GAKNLYI+SV G   RLNRLP+A  GDMV+ATVKKGKPDLRKK+MPA++VRQRK WRRKDGV++YFEDNAGVIVNPKGEM GSAITGP+ KECADLWPRIAS A  +V
Sbjct:    3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.099e-56
Identity = 104/139 (74.82%), Postives = 123/139 (88.49%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++ISV GI+GRLNRLPSA VGDM + +VKKGKP+LRKKV+  V++RQRK +RRKDG F+YFEDNAGVIVN KGEM GSAITGP+ KECADLWPRIA+ A +I
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSI 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 4.177e-56
Identity = 100/133 (75.19%), Postives = 118/133 (88.72%), Query Frame = 1
Query:   34 GSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            G+ G KFR+SLGLPV A +NCAD++GA+NLYII+VKG   RLNRLP+A +GDMVMATVKKGKP+LRKKVMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEM GSAITGP+GKECADLWPR+AS +  +V
Sbjct:    5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.177e-56
Identity = 106/139 (76.26%), Postives = 123/139 (88.49%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++I+V GIKGRLNRLPSA VGDM +A+VKKGKP+LRKKV+ AV+VRQRK +RR DG  +YFEDNAGVIVN KGEM GSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNAGSI 139          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.899e-49
Identity = 91/132 (68.94%), Postives = 114/132 (86.36%), Query Frame = 1
Query:   37 SAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            + G+ +R+SLGLPV A +N AD++GAKNLY+I+VKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV   ++VRQRK W+RKDGV++YFEDNAGV+ NPKGE+ G+ I GP+ KEC+DLWP++A+ A  IV
Sbjct:    6 AVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLWPKVATNAGTIV 136          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.304e-41
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKG-EMNGSAITGPIGKECA-DLWPRIASAANAIV 432
            G +FR+SL LPV A VNCAD+TGAKNLYIISVKG  GRLNRLP+A +GD+VMA+VKKGKP+LR+KV+ AVI+RQRK WRRKDG  +YFEDNAGVIVN +G +   S I GP+ KE      P+I+S A AIV
Sbjct:   10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKEAGRPSGPKISSHAPAIV 141          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RL23_PONAB3.900e-6282.7360S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_AEDAE6.653e-6280.5860S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_CANFA1.936e-6182.7360S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_DROME2.528e-6179.8660S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_SCHPO2.616e-5875.9160S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_CAEEL1.099e-5674.8260S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_YEAST4.177e-5675.1960S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_BRUMA4.177e-5676.2660S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_DICDI2.899e-4968.9460S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR1.304e-4166.6760S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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