CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DESVH (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384
            + V +T+  AD++GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SCEOB (50S ribosomal protein L14, chloroplastic OS=Scenedesmus obliquus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G  GR     +A +GD+++A VK   P++  K   V+ AVIVR  K  RR++G+ + F+DNA V++N +G   G+ + GPI +E  D  + +I S A  +V
Sbjct:    8 LNVADNSGARKLMCIRVLG-GGR----QTATIGDVIIAVVKDALPNMPLKKSDVVRAVIVRTSKGVRRENGMMLCFDDNAAVVINKEGNPRGTRVFGPIARELRDRNFTKIVSLAPEVV 121          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384
            +N AD++GAK LY I V G  G   R  S  VGD+++ +VK+  P+ + K   V+ AV+VR +K  RR DG ++ F+DN+ V++N   E  G+ I GP+ +E
Sbjct:    8 LNAADNSGAKRLYCIKVLG--GTRKRYAS--VGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPVARE 105          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_RENSM (50S ribosomal protein L14 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILAIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384
            +N AD++GAK L +I V G  G   R     +GD+V+A+VK+  P    K   ++ AVIVR RK  RR DG ++ F+DNAGV++N   E   + I GP+ +E
Sbjct:    8 LNVADNSGAKKLMVIRVLG--GSRKRFGK--IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CHLP8 (50S ribosomal protein L14 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD++GAK +  I V G  GR      A +GD +M TVK   P+    +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE  G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVTVKAAVPNGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_ARTCA (50S ribosomal protein L14 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_ARTAT (50S ribosomal protein L14 OS=Arthrobacter aurescens (strain TC1) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F+DNA VI+N      G+ + GPI +E  D  + +I S A  +V
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIISLAPEVV 122          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RL14_DESVH9.741e-1340.7450S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RK14_SCEOB9.741e-1338.6650S ribosomal protein L14, chloroplastic OS=Scened... [more]
RL14_SYNFM1.272e-1241.1850S ribosomal protein L14 OS=Syntrophobacter fumar... [more]
RL14_RENSM1.272e-1243.1450S ribosomal protein L14 OS=Renibacterium salmoni... [more]
RL14_FUSNN1.272e-1242.1650S ribosomal protein L14 OS=Fusobacterium nucleat... [more]
RL14_CHLP81.272e-1242.1650S ribosomal protein L14 OS=Chlorobaculum parvum ... [more]
RL14_ARTS21.272e-1243.1450S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]
RL14_ARTCA1.272e-1243.1450S ribosomal protein L14 OS=Arthrobacter chloroph... [more]
RL14_ARTAT1.272e-1243.1450S ribosomal protein L14 OS=Arthrobacter aurescen... [more]
RK14_PORPU1.272e-1237.5050S ribosomal protein L14, chloroplastic OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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