CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_EMIHU (50S ribosomal protein L14, chloroplastic OS=Emiliania huxleyi GN=rpl14 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12 Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD++GAK L I V G R VGD+++ VK P+L R V+ AVIVR ++ RRKDG + F+DNA VI+N + G+ + GPI +E D Sbjct: 8 LNVADNSGAKKLMCIRVLGTNRRYGH-----VGDVIIGVVKDATPNLTVKRSDVVRAVIVRTKQSIRRKDGSRLRFDDNATVIINKENNPRGTRVFGPIARELKD 107
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12 Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD++GA+ + I V G R A +GD+++A VK P++ R +V+ AV+VR RK RR +G+ + F+DNA V++N +G G+ + GP+ +E D Sbjct: 8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12 Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGAK + I V G GR A +GD+++ATVK P K V+ AV+VR +K RR DG ++ F++NA VI+ G+ G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGA+ + I V G GR A +GD+++ATVK P K V+ AV+VR K RR DG ++ F++NA VI+ G+ G+ I GP+G+E D Sbjct: 11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGA+ + I V G GR A +GD+++ATVK P K V+ AV+VR K RR DG ++ F++NA VI+ G+ G+ I GP+G+E D Sbjct: 11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK + I V G GR A +GD+++ATVK P K V+ AVIVR +K RR DG ++ F++NA VI+ G+ G+ I GP+G+E + + RI S A ++ Sbjct: 11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRELREKKFMRIISLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384 AD+TGAK L I V G G R S VGD ++ATVK+ P K V+ AVIVR +K + R DG + F+DNA VI+N +G G+ I GP+ +E Sbjct: 11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD++GAK + I V G GR A +GD +M TVK P +K+V AV+VR K RRKDG ++ F++NA V++N +GE G+ I GP+ +E D Sbjct: 11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384 +N AD++GA+ L I + G R A +GD+++A VK+ P++ + +V+ AV+VR K +RK+G + F+DNA VI+N +G G+ + GP+ +E Sbjct: 8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_BIGNA (50S ribosomal protein L14, chloroplastic OS=Bigelowiella natans GN=rpl14 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12 Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 V D++GAK + I V G KGR N+L + +GD+++ VK+ P+ K ++ AV+VR RK +RK+G+++ F+DNA VIVN + G+ I GP+ +E D + +I S A ++ Sbjct: 8 VKVVDNSGAKEIVCIRVLG-KGR-NQLSN--IGDIIIGVVKEAIPNTPLKKSDIVRAVVVRTRKGLKRKNGIYIRFDDNAAVIVNKENNPRGTRIFGPVARELRDKSFMKIVSLAPEVI 122 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |