CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_EMIHU (50S ribosomal protein L14, chloroplastic OS=Emiliania huxleyi GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD++GAK L  I V G   R        VGD+++  VK   P+L   R  V+ AVIVR ++  RRKDG  + F+DNA VI+N +    G+ + GPI +E  D
Sbjct:    8 LNVADNSGAKKLMCIRVLGTNRRYGH-----VGDVIIGVVKDATPNLTVKRSDVVRAVIVRTKQSIRRKDGSRLRFDDNATVIINKENNPRGTRVFGPIARELKD 107          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.272e-12
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD++GA+ +  I V G   R      A +GD+++A VK   P++   R +V+ AV+VR RK  RR +G+ + F+DNA V++N +G   G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR +K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  +  + RI S A  ++
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRELREKKFMRIISLAPEVL 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384
            AD+TGAK L  I V G  G   R  S  VGD ++ATVK+  P    K   V+ AVIVR +K + R DG  + F+DNA VI+N +G   G+ I GP+ +E
Sbjct:   11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD++GAK +  I V G  GR      A +GD +M TVK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE  G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384
            +N AD++GA+ L  I + G   R      A +GD+++A VK+  P++   + +V+ AV+VR  K  +RK+G  + F+DNA VI+N +G   G+ + GP+ +E
Sbjct:    8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_BIGNA (50S ribosomal protein L14, chloroplastic OS=Bigelowiella natans GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            V   D++GAK +  I V G KGR N+L +  +GD+++  VK+  P+   K   ++ AV+VR RK  +RK+G+++ F+DNA VIVN +    G+ I GP+ +E  D  + +I S A  ++
Sbjct:    8 VKVVDNSGAKEIVCIRVLG-KGR-NQLSN--IGDIIIGVVKEAIPNTPLKKSDIVRAVVVRTRKGLKRKNGIYIRFDDNAAVIVNKENNPRGTRIFGPVARELRDKSFMKIVSLAPEVI 122          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RK14_EMIHU1.272e-1240.9550S ribosomal protein L14, chloroplastic OS=Emilia... [more]
RK14_CHLAT1.272e-1237.1450S ribosomal protein L14, chloroplastic OS=Chloro... [more]
RL14_KOCRD1.662e-1242.1650S ribosomal protein L14 OS=Kocuria rhizophila (s... [more]
RL14_SALTO2.170e-1241.1850S ribosomal protein L14 OS=Salinispora tropica (... [more]
RL14_SALAI2.170e-1241.1850S ribosomal protein L14 OS=Salinispora arenicola... [more]
RL14_KINRD2.170e-1240.5250S ribosomal protein L14 OS=Kineococcus radiotole... [more]
RL14_HERA22.170e-1245.4550S ribosomal protein L14 OS=Herpetosiphon auranti... [more]
RL14_CHLPB2.170e-1242.1650S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]
RK14_PHYPA2.170e-1236.2750S ribosomal protein L14, chloroplastic OS=Physco... [more]
RK14_BIGNA2.170e-1237.8250S ribosomal protein L14, chloroplastic OS=Bigelo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
back to top