CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_TROWT (50S ribosomal protein L14 OS=Tropheryma whipplei (strain Twist) GN=rplN PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK+L +I V G G R S +GD+V+A+VK P + V+ AVIVR K RR DG ++ F+DNA VI+ P + G+ I GP+ +E D + RI S A +V Sbjct: 11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_TROW8 (50S ribosomal protein L14 OS=Tropheryma whipplei (strain TW08/27) GN=rplN PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK+L +I V G G R S +GD+V+A+VK P + V+ AVIVR K RR DG ++ F+DNA VI+ P + G+ I GP+ +E D + RI S A +V Sbjct: 11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 41/119 (34.45%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG G+ + G + +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 41/119 (34.45%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG G+ + G + +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 AD+TGAK + I V G + A +GD ++A VK+ P++ R V+ AV+VR +K RR+DG+++ F+DNA VIVN G+ + GP+ +E D + +I S A ++ Sbjct: 11 ADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRDKNYSKIVSLAPEVL 121
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD++GA+ L I V G + R A +GD+++A VK P++ K V+ AV+VR KP RR G+ + F+DNA VIVN +G G+ + GP+ +E D Sbjct: 11 ADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARELRD 107
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 + + + +N AD++GA+ + I V G N A +GD+++ VK P++ + ++ AVIVR +K RR DG+ + F+DNA VI+N + G+ + GPI KE D + +I S A +V Sbjct: 2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRDKNFSKIISLAAEVV 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PROA2 (50S ribosomal protein L14 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplN PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.702e-12 Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD++GAK + I V G GR A +GD +M TVK P +K V AV+VR K +RKDG ++ F++NA V++N +GE G+ I GP+ +E D Sbjct: 11 ADNSGAKKVRCIHVFGGTGRRY----AAIGDQIMVTVKAAVPGGVVKKKDVCKAVVVRCAKEKKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PORYE (50S ribosomal protein L14, chloroplastic OS=Porphyra yezoensis GN=rpl14 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.702e-12 Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ + I V G PS A +GD+++ VK P++ R V+ AV+VR RK RR DG+ + F DNA VI+N G+ + GPI +E D + +I S A +V Sbjct: 8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRTDGMSIRFGDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIVSLAPEVV 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SOLUE (50S ribosomal protein L14 OS=Solibacter usitatus (strain Ellin6076) GN=rplN PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.835e-12 Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD++GA+ L I +G G L A +GD+V A VK+ PD + KV+ VIVR RK RRKDG ++ F+ NA V++N GE G+ + GP+ +E D + +I S A ++ Sbjct: 11 ADNSGARRLSCILPRG--GDLGL--RAGLGDVVTAAVKEAAPDSAIKKGKVVRCVIVRMRKETRRKDGTYIRFDSNAAVLINDVGEPVGTRVFGPVARELRDKKFMKIVSLAPEVI 122 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |