CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_TROWT (50S ribosomal protein L14 OS=Tropheryma whipplei (strain Twist) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK+L +I V G  G   R  S  +GD+V+A+VK   P      +  V+ AVIVR  K  RR DG ++ F+DNA VI+ P  +  G+ I GP+ +E  D  + RI S A  +V
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_TROW8 (50S ribosomal protein L14 OS=Tropheryma whipplei (strain TW08/27) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK+L +I V G  G   R  S  +GD+V+A+VK   P      +  V+ AVIVR  K  RR DG ++ F+DNA VI+ P  +  G+ I GP+ +E  D  + RI S A  +V
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 41/119 (34.45%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG   G+ + G + +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 41/119 (34.45%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG   G+ + G + +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            AD+TGAK +  I V G   +      A +GD ++A VK+  P++   R  V+ AV+VR +K  RR+DG+++ F+DNA VIVN      G+ + GP+ +E  D  + +I S A  ++
Sbjct:   11 ADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRDKNYSKIVSLAPEVL 121          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD++GA+ L  I V G + R      A +GD+++A VK   P++  K   V+ AV+VR  KP RR  G+ + F+DNA VIVN +G   G+ + GP+ +E  D
Sbjct:   11 ADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARELRD 107          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            + + + +N AD++GA+ +  I V G     N    A +GD+++  VK   P++   +  ++ AVIVR +K  RR DG+ + F+DNA VI+N +    G+ + GPI KE  D  + +I S A  +V
Sbjct:    2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRDKNFSKIISLAAEVV 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PROA2 (50S ribosomal protein L14 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.702e-12
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD++GAK +  I V G  GR      A +GD +M TVK   P     +K V  AV+VR  K  +RKDG ++ F++NA V++N +GE  G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AAIGDQIMVTVKAAVPGGVVKKKDVCKAVVVRCAKEKKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_PORYE (50S ribosomal protein L14, chloroplastic OS=Porphyra yezoensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.702e-12
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F DNA VI+N      G+ + GPI +E  D  + +I S A  +V
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRTDGMSIRFGDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIVSLAPEVV 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SOLUE (50S ribosomal protein L14 OS=Solibacter usitatus (strain Ellin6076) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.835e-12
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD++GA+ L  I  +G  G L     A +GD+V A VK+  PD    + KV+  VIVR RK  RRKDG ++ F+ NA V++N  GE  G+ + GP+ +E  D  + +I S A  ++
Sbjct:   11 ADNSGARRLSCILPRG--GDLGL--RAGLGDVVTAAVKEAAPDSAIKKGKVVRCVIVRMRKETRRKDGTYIRFDSNAAVLINDVGEPVGTRVFGPVARELRDKKFMKIVSLAPEVI 122          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RL14_TROWT2.834e-1241.8850S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RL14_TROW82.834e-1241.8850S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RK14_SACOF2.834e-1234.4550S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_SACHY2.834e-1234.4550S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_PHATR2.834e-1237.0750S ribosomal protein L14, chloroplastic OS=Phaeod... [more]
RK14_NEPOL2.834e-1240.2050S ribosomal protein L14, chloroplastic OS=Nephro... [more]
RK14_GRATL2.834e-1234.4050S ribosomal protein L14, chloroplastic OS=Gracil... [more]
RL14_PROA23.702e-1241.1850S ribosomal protein L14 OS=Prosthecochloris aest... [more]
RK14_PORYE3.702e-1237.5050S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RL14_SOLUE4.835e-1239.6650S ribosomal protein L14 OS=Solibacter usitatus (... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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