CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 66/126 (52.38%), Postives = 94/126 (74.60%), Query Frame = 1 Query: 55 RMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 R + GLP+ A + CAD+TGA+++ +I VK G+ R+P+A VGDM MA+VKKG P++R KV+ AV++RQ++P+RR DG + FEDNA V+V P GE+ GS I GP+ +E A+ WPRIA+ A+ IV Sbjct: 7 RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.054e-35 Identity = 72/140 (51.43%), Postives = 101/140 (72.14%), Query Frame = 1 Query: 13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 M K+G+G A ++ R++ GL V + V AD++GAK + II V G KGRL R+P A +GD+V+ TVKKG P++RK+V+ AVIVRQ++P+RR DG ++ FEDNA IV P+G GS I GPI KE A+ WP++A+ A +V Sbjct: 1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQLANIATIVV 140
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.544e-34 Identity = 66/127 (51.97%), Postives = 96/127 (75.59%), Query Frame = 1 Query: 49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAI 429 +++M+ G+ V + CAD++GAK L I VK +GRLNRLP+A GD+ + +VKKGKP+LRKKV A+++RQ+K WRR DG + FEDNA V++N KGE+ G+ I GP+ +E AD+WP+I+S A++I Sbjct: 19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPKISSQASSI 145
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34 Identity = 68/133 (51.13%), Postives = 97/133 (72.93%), Query Frame = 1 Query: 34 GSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 G AG + R GLP+ A + CAD+TGA+++ +I VK G+ R+P+A VGDM +A+VKKG P++R KV+ AV++RQ++P+RR DG + FEDNA V+V P GE+ GS I GP+ +E A+ WPRIA+ A+ IV Sbjct: 3 GIAGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33 Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 LPV A + CAD+TGA+ L II+VKG KG RLP+A +GDMV+ +VK+G PD+RK+V+ AVIVRQRK +RR DG + FEDNA VIV P G GS I GP+ KE A+ WPRI S A+ IV Sbjct: 13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPRIGSIASIIV 133
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33 Identity = 69/137 (50.36%), Postives = 98/137 (71.53%), Query Frame = 1 Query: 22 RGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 +G G AG + ++ GL V + V AD++GAK II V G KGRL R+P A VGDMV+ TVKKG P++RK+V+ A+++RQR+P+RR DG ++ FEDNA VIV+P G GS I GP+ +E A+ WP++A+ A+ I+ Sbjct: 3 KGAAG-AGPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPKVANIASIII 138
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33 Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 1 Query: 13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 M+K+ + G +++ ++ GL V + V AD++GAK + IISV +K RL RLPSA VGD+V+ +VKKG P +R++V+ AV+VRQR+P+RR DG ++ FEDNA VIVNP G GS + GPI +E A+ WPR+A A IV Sbjct: 1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPRVAKIATMIV 140
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32 Identity = 65/126 (51.59%), Postives = 91/126 (72.22%), Query Frame = 1 Query: 55 RMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 R + GLP+ A + C D+TGAK + +I VK + R+P+A VGDM +A+VKKG P++R KV+ AV+VRQR+P+RR DG + FEDNA V+V P GE+ GS I GP+ +E A+ WPRIA+ ++ IV Sbjct: 7 RETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAISSTIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32 Identity = 68/126 (53.97%), Postives = 93/126 (73.81%), Query Frame = 1 Query: 55 RMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 +++ LPV A + C D+TGA+ + IISV+G KG RL +A VGDMV+ +VKKG D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G + GS I GP+ KE AD WP + SAA+ IV Sbjct: 7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWPSVGSAASIIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32 Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 58 MSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 +S LP+ A + C D+TGA+ + IISVKG KG RL SA VGDMV+ +VKKG D+R++V AV+VRQ+K +RR DG+ + FEDNA VI+ G + GS I GPI KE ADLWP I SAA+ IV Sbjct: 8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLWPAIGSAASIIV 132 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |