CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SOLBU (50S ribosomal protein L14, chloroplastic OS=Solanum bulbocastanum GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I + G R A +GD+++A +K+ P++ R +V+ AVIVR K +R +G+ + ++DNA V+++ +G G+ I G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYSJ (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG G+ + G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYSI (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. indica GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG G+ + G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYSA (50S ribosomal protein L14, chloroplastic OS=Oryza sativa GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG G+ + G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYNI (50S ribosomal protein L14, chloroplastic OS=Oryza nivara GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG G+ + G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_OEDCA (50S ribosomal protein L14, chloroplastic OS=Oedogonium cardiacum GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD++GA+ L I V G + SA +G++++A VK P+ K ++ AVIVR +K +R++G+ + F+DNA V++N +G G+ + GPI +E D Sbjct: 8 LNVADNSGARKLMCIRVLGGGNQ-----SANIGNIIIAVVKDAIPNTAFKKSDIVRAVIVRTKKGIKRENGMTIRFDDNAAVVINKEGNPRGTRVFGPIARELRD 107
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_NICSY (50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I + G R A +GD+++A +K+ P++ R +V+ AVIVR K +R +G+ + ++DNA V+++ +G G+ I G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CUSEX (50S ribosomal protein L14, plastid OS=Cuscuta exaltata GN=rpl14 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I + G R A +GD+++A +K+ P++ R +++ AVIVR RK +R +G+ + ++DNA V+++ +G G+ I G I +E L + +I S A ++ Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSELVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRPLNFTKIVSLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11 Identity = 40/119 (33.61%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I + G R A +GD+++A +KK P+ R +V+ AVIVR K +R++G+ + ++DNA V+++ +G G+ I G I +E L + +I S A ++ Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |