CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_SOLBU (50S ribosomal protein L14, chloroplastic OS=Solanum bulbocastanum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G   G+ I G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYSJ (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG   G+ + G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYSI (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. indica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG   G+ + G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYSA (50S ribosomal protein L14, chloroplastic OS=Oryza sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG   G+ + G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ORYNI (50S ribosomal protein L14, chloroplastic OS=Oryza nivara GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG   G+ + G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_OEDCA (50S ribosomal protein L14, chloroplastic OS=Oedogonium cardiacum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD++GA+ L  I V G   +     SA +G++++A VK   P+   K   ++ AVIVR +K  +R++G+ + F+DNA V++N +G   G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGGGNQ-----SANIGNIIIAVVKDAIPNTAFKKSDIVRAVIVRTKKGIKRENGMTIRFDDNAAVVINKEGNPRGTRVFGPIARELRD 107          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_NICSY (50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G   G+ I G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CUSEX (50S ribosomal protein L14, plastid OS=Cuscuta exaltata GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I + G   R      A +GD+++A +K+  P++   R +++ AVIVR RK  +R +G+ + ++DNA V+++ +G   G+ I G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSELVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRPLNFTKIVSLAPEVL 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 40/119 (33.61%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  K  +R++G+ + ++DNA V+++ +G   G+ I G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RK14_SOLBU9.118e-1132.7750S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_ORYSJ9.118e-1133.6150S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYSI9.118e-1133.6150S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYSA9.118e-1133.6150S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYNI9.118e-1133.6150S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_OEDCA9.118e-1136.1950S ribosomal protein L14, chloroplastic OS=Oedogo... [more]
RK14_NICSY9.118e-1132.7750S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_CUSEX9.118e-1132.7750S ribosomal protein L14, plastid OS=Cuscuta exal... [more]
RK14_CUCSA9.118e-1133.6150S ribosomal protein L14, chloroplastic OS=Cucumi... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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