CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28 Identity = 62/142 (43.66%), Postives = 97/142 (68.31%), Query Frame = 1 Query: 13 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 M+KRG + G +R+ L G+ + + V AD++GA +I V K R+P A VGD+V+ +++ GKP+LRK+VM A+++RQR+P+RR DG ++ FEDNA VI+ P+GE G+ I GP+ KE A+ WP++++ A+ IV Sbjct: 1 MAKRGPK-TVGVSYRLGLTPGVFMESLVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKEAAERWPKLSAMASIIV 141
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 8.208e-28 Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1 Query: 82 ATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 ++V AD++GAK II + G +G L R+P A + D+VM +V+KG PD+RK+ AVIVRQR P+RR DG ++ FEDNA VI+NP G G+ + GPI +E A+ WP+IAS A ++ Sbjct: 22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASVATMVI 138
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 8.208e-28 Identity = 60/130 (46.15%), Postives = 89/130 (68.46%), Query Frame = 1 Query: 43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 GNK ++ + + CAD+TGA+ L+++SVK +G NR P A +GDMV+ +VKKG P++RK++ AVI+RQ+K +RR DG+ + FEDNA VI + G GS I GP+ +E A+ + +IAS+A IV Sbjct: 3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPVAREVAERFGKIASSAAIIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27 Identity = 62/144 (43.06%), Postives = 97/144 (67.36%), Query Frame = 1 Query: 13 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 M+KRG + G +R L G+ + + VN AD++GAK + +I V G K R+P VGDMV+ +V++GKP++RK+++ A++VRQR+P+RR DG ++ FEDNA VIV +G++ G+ + GP+ E A WP++AS A I+ Sbjct: 1 MAKRGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRWPQVASIATMII 144
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.119e-27 Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 +PV A + CAD++GAK L +I+V + R +RLPSA VGD VKKG +LRK+V AVI+RQ+ P RR +GV + FEDNA V++ P+GE G+ I GP+ E ++ WPR+A+ A+ +V Sbjct: 20 IPVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKWPRVANLASMVV 140
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.074e-27 Identity = 59/130 (45.38%), Postives = 89/130 (68.46%), Query Frame = 1 Query: 43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 G + ++ L A + C D+TGA+ + IISVK +G NR+P +GDM + +VKKG P++RK+++ AVIVRQ+K +RR DG+ + FEDNA VIV+ KG G+ I GP+ +E A+ +P+I + A+ IV Sbjct: 3 GIRSKIPRALNAGAKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVAREAAERFPKIGTTASMIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.074e-27 Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 1 Query: 49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 K ++ GL + + CAD+TGA+ L I SV G +GR NR P A +GD + +V KG P++R++V+ AV+VRQRKP RR DG + FEDNA VI++ GE G+ I GPI +E A+ + IAS A IV Sbjct: 5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.074e-27 Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 1 Query: 49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 K ++ GL + + CAD+TGA+ L I SV G +GR NR P A +GD + +V KG P++R++V+ AV+VRQRKP RR DG + FEDNA VI++ GE G+ I GPI +E A+ + IAS A IV Sbjct: 5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.548e-26 Identity = 64/144 (44.44%), Postives = 95/144 (65.97%), Query Frame = 1 Query: 13 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADDTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 M+KRG + G +F ++ G+ + + V AD++GAK + +I V G K R+P A VGDMV+ V++GKP+LRK++ A++VRQR+P+RR DG ++ FEDNA VIV P+G+ GS I GP+ E WP IA+ A+ +V Sbjct: 1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26 Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = 1 Query: 13 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 M+KRG + G +F ++ G+ + + V AD++GAK + +I V G + R+P A VGDMV+ V++GKP+LRK++ A++VRQR+P+RR DG ++ FEDNA VIV P+G+ GS I GP+ E WP IA+ A+ +V Sbjct: 1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |