CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 63/144 (43.75%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G  +R  +  G+ + + V  AD++GA+ + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+  GS I GP+  E    WP IA+ A+ IV
Sbjct:    1 MAKRGGKRTVGVSYRFHVTPGIFLNSLVPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIIV 144          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   13 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G   +F ++ G+ + + V  AD++GAK + +I V G   +    R+P A VGDMV+  VK+GKP+LR+++   ++VRQR+P+RR DG ++ FEDNA VIV P+G+  GS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            G +  +   L   A V C D+TGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G   G+ I GPI +E A+ +P+I + A+ IV
Sbjct:    3 GIRSNIPRALNAGAKVPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            G +  +   L   A + C D+TGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G   G+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GMRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.712e-25
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   67 GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            GL   + + CAD+TGA+ L +ISV G  G  NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VIV+   +  G+ + GPI +E A  +  +ASAA  IV
Sbjct:   11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.712e-25
Identity = 59/128 (46.09%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            K  ++ GL   + + CAD+TGA+ L +ISV G  G  NR P A +GD V  +V KG P++R++V+ AV+VRQRKP RR +G  + FEDNA VI++   E  G+ I GP+ +E A+ +  IAS A  IV
Sbjct:    5 KADVTQGLSKGSLITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.235e-25
Identity = 62/128 (48.44%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            K  ++ GL   + V CAD+TGA+ L +ISV G  G  NR P A +GD V  +V KG P++R++V+ AVIVRQRK  RR DG  + FEDNA VI++   E  G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADVTKGLERGSLVTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.813e-25
Identity = 57/130 (43.85%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            G +  +   L   A + C D+TGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+++ AV+VRQ++ +RR DG+ + FEDNA VI +  G   G+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GIRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.109e-24
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   67 GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            GL   + + CAD+TGA+ L + S+ G  G  NR P A +GD +  +V KG P++R++V+ AV++RQRKP RR DG  + FEDNA VIV+   +  G+ + GPI +E A+ +  IAS A  IV
Sbjct:   11 GLEKGSLITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 LAAKMSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            + AK SK  R  + G K            + CAD+TGA+ + I+SV G  G   R P   +GD+   TVKKG PD+RKK++ AV++RQ+K  RR +G+ + F+DNA V+V+ K E  G+ I GP+ +E A+ +P++ S A  IV
Sbjct:    1 MKAKQSKTPRALATGTK------------LTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGSMATIIV 132          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RL14_PYRIL3.449e-2643.7550S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_PYRAR5.883e-2643.0650S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_METBF1.310e-2546.1550S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METAC1.310e-2544.6250S ribosomal protein L14P OS=Methanosarcina aceti... [more]
RL14_HALMA1.712e-2547.5450S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_HALLT1.712e-2546.0950S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_HALWD2.235e-2548.4450S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_METMA3.813e-2543.8550S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_NATPD1.109e-2445.0850S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_METB65.506e-2440.9750S ribosomal protein L14P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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